(12 nodes) Mixed, incl. Protein Yip1/4-like, and Golgi apparatus membrane protein TVP23-like network (Pygoscelis adeliae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TMPPE	Transmembrane protein with metallophosphoesterase domain. (439 aa)
	AS28_12629	Golgi apparatus membrane protein TVP23 homolog. (193 aa)
	IER3IP1	Immediate early response 3-interacting protein 1. (52 aa)
	TVP23A	Golgi apparatus membrane protein TVP23 homolog. (153 aa)
	YIPF1	Protein YIPF. (305 aa)
	AS28_05149	Protein YIPF. (218 aa)
	YIPF3	Protein YIPF3. (246 aa)
	YIPF7	Protein YIPF7. (258 aa)
	AS28_09345	Keratin-like KRT222; Belongs to the intermediate filament family. (240 aa)
	YIPF5	Protein YIPF. (210 aa)
	TMEM60	Transmembrane protein 60. (134 aa)
	PQLC3	PQ-loop repeat-containing protein 3. (113 aa)

Your Current Organism:

Pygoscelis adeliae

NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS28_05149	IER3IP1	A0A093P531	A0A093NNF3	Protein YIPF.	Immediate early response 3-interacting protein 1.	0.426
AS28_05149	PQLC3	A0A093P531	A0A093RQF1	Protein YIPF.	PQ-loop repeat-containing protein 3.	0.465
AS28_05149	TMPPE	A0A093P531	A0A093NA28	Protein YIPF.	Transmembrane protein with metallophosphoesterase domain.	0.480
AS28_05149	YIPF1	A0A093P531	A0A093NVN6	Protein YIPF.	Protein YIPF.	0.738
AS28_05149	YIPF3	A0A093P531	A0A093P542	Protein YIPF.	Protein YIPF3.	0.692
AS28_09345	TMEM60	A0A093PFN5	A0A093RGX9	Keratin-like KRT222; Belongs to the intermediate filament family.	Transmembrane protein 60.	0.424
AS28_12629	TMEM60	A0A093NB37	A0A093RGX9	Golgi apparatus membrane protein TVP23 homolog.	Transmembrane protein 60.	0.627
AS28_12629	YIPF1	A0A093NB37	A0A093NVN6	Golgi apparatus membrane protein TVP23 homolog.	Protein YIPF.	0.625
AS28_12629	YIPF3	A0A093NB37	A0A093P542	Golgi apparatus membrane protein TVP23 homolog.	Protein YIPF3.	0.534
IER3IP1	AS28_05149	A0A093NNF3	A0A093P531	Immediate early response 3-interacting protein 1.	Protein YIPF.	0.426
IER3IP1	YIPF5	A0A093NNF3	A0A093PJF7	Immediate early response 3-interacting protein 1.	Protein YIPF.	0.609
IER3IP1	YIPF7	A0A093NNF3	A0A093P9G3	Immediate early response 3-interacting protein 1.	Protein YIPF7.	0.453
PQLC3	AS28_05149	A0A093RQF1	A0A093P531	PQ-loop repeat-containing protein 3.	Protein YIPF.	0.465
PQLC3	TMPPE	A0A093RQF1	A0A093NA28	PQ-loop repeat-containing protein 3.	Transmembrane protein with metallophosphoesterase domain.	0.626
TMEM60	AS28_09345	A0A093RGX9	A0A093PFN5	Transmembrane protein 60.	Keratin-like KRT222; Belongs to the intermediate filament family.	0.424
TMEM60	AS28_12629	A0A093RGX9	A0A093NB37	Transmembrane protein 60.	Golgi apparatus membrane protein TVP23 homolog.	0.627
TMPPE	AS28_05149	A0A093NA28	A0A093P531	Transmembrane protein with metallophosphoesterase domain.	Protein YIPF.	0.480
TMPPE	PQLC3	A0A093NA28	A0A093RQF1	Transmembrane protein with metallophosphoesterase domain.	PQ-loop repeat-containing protein 3.	0.626
TVP23A	YIPF1	A0A093NS27	A0A093NVN6	Golgi apparatus membrane protein TVP23 homolog.	Protein YIPF.	0.625
TVP23A	YIPF3	A0A093NS27	A0A093P542	Golgi apparatus membrane protein TVP23 homolog.	Protein YIPF3.	0.534