6 items (Pygoscelis adeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PSMC6	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family. (361 aa)
	AS28_13479	26S proteasome non-ATPase regulatory subunit 4. (284 aa)
	PSMD1	26S proteasome non-ATPase regulatory subunit 1. (951 aa)
	AS28_13627	26S protease regulatory subunit 4; Belongs to the AAA ATPase family. (438 aa)
	PSMD5	26S proteasome non-ATPase regulatory subunit 5. (447 aa)
	PSMC3	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family. (388 aa)

Your Current Organism:

Pygoscelis adeliae

NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AS28_13479	AS28_13627	A0A093P839	A0A093NPM3	26S proteasome non-ATPase regulatory subunit 4.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
AS28_13479	PSMC3	A0A093P839	A0A093P2B7	26S proteasome non-ATPase regulatory subunit 4.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
AS28_13479	PSMC6	A0A093P839	A0A093P224	26S proteasome non-ATPase regulatory subunit 4.	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.995
AS28_13479	PSMD1	A0A093P839	A0A093NPR3	26S proteasome non-ATPase regulatory subunit 4.	26S proteasome non-ATPase regulatory subunit 1.	0.994
AS28_13479	PSMD5	A0A093P839	A0A093P0D0	26S proteasome non-ATPase regulatory subunit 4.	26S proteasome non-ATPase regulatory subunit 5.	0.984
AS28_13627	AS28_13479	A0A093NPM3	A0A093P839	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 4.	0.999
AS28_13627	PSMC3	A0A093NPM3	A0A093P2B7	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.999
AS28_13627	PSMC6	A0A093NPM3	A0A093P224	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.998
AS28_13627	PSMD1	A0A093NPM3	A0A093NPR3	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 1.	0.996
AS28_13627	PSMD5	A0A093NPM3	A0A093P0D0	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 5.	0.982
PSMC3	AS28_13479	A0A093P2B7	A0A093P839	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 4.	0.999
PSMC3	AS28_13627	A0A093P2B7	A0A093NPM3	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.999
PSMC3	PSMC6	A0A093P2B7	A0A093P224	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	0.996
PSMC3	PSMD1	A0A093P2B7	A0A093NPR3	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 1.	0.995
PSMC3	PSMD5	A0A093P2B7	A0A093P0D0	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 5.	0.970
PSMC6	AS28_13479	A0A093P224	A0A093P839	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 4.	0.995
PSMC6	AS28_13627	A0A093P224	A0A093NPM3	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 4; Belongs to the AAA ATPase family.	0.998
PSMC6	PSMC3	A0A093P224	A0A093P2B7	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S protease regulatory subunit 6A; Belongs to the AAA ATPase family.	0.996
PSMC6	PSMD1	A0A093P224	A0A093NPR3	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 1.	0.994
PSMC6	PSMD5	A0A093P224	A0A093P0D0	26S protease regulatory subunit 10B; Belongs to the AAA ATPase family.	26S proteasome non-ATPase regulatory subunit 5.	0.970