STRINGSTRING
AS28_12562 AS28_12562 AS28_12574 AS28_12574 MYO1C MYO1C AS28_12560 AS28_12560 AS28_12572 AS28_12572 AS28_12578 AS28_12578 TAF1A TAF1A GSK3B GSK3B ERCC6 ERCC6 AS28_12564 AS28_12564 AS28_12566 AS28_12566 SF3B1 SF3B1 AS28_02578 AS28_02578 AS28_12561 AS28_12561 AS28_12568 AS28_12568 AS28_12573 AS28_12573 MYBBP1A MYBBP1A POLR2H POLR2H AS28_09607 AS28_09607 DEK DEK BAZ1B BAZ1B AS28_07752 AS28_07752 H3F3B H3F3B AS28_03911 AS28_03911 AS28_11535 AS28_11535 POLR1A POLR1A TWISTNB TWISTNB KAT2B KAT2B AS28_14622 AS28_14622 SMARCA1 SMARCA1 POLR1B POLR1B SMARCA5 SMARCA5 AS28_08341 AS28_08341 POLR2E POLR2E TAF1B TAF1B AS28_12563 AS28_12563 AS28_12570 AS28_12570 TBP TBP AS28_05161 AS28_05161
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AS28_12562Histone H2B; Belongs to the histone H2B family. (126 aa)
AS28_12574Histone H2B; Belongs to the histone H2B family. (126 aa)
MYO1CUnconventional myosin-Ic; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1030 aa)
AS28_12560Histone H2B; Belongs to the histone H2B family. (126 aa)
AS28_12572Histone H2A; Belongs to the histone H2A family. (129 aa)
AS28_12578Histone H2A; Belongs to the histone H2A family. (89 aa)
TAF1ATATA box-binding protein-associated factor RNA polymerase I subunit A. (412 aa)
GSK3BGlycogen synthase kinase-3 beta; Belongs to the protein kinase superfamily. (371 aa)
ERCC6DNA excision repair protein ERCC-6. (1507 aa)
AS28_12564Histone H2B; Belongs to the histone H2B family. (126 aa)
AS28_12566Histone H2B; Belongs to the histone H2B family. (126 aa)
SF3B1Splicing factor 3B subunit 1. (1292 aa)
AS28_02578TATA box-binding protein-associated factor RNA polymerase I subunit D. (197 aa)
AS28_12561Histone H3; Belongs to the histone H3 family. (133 aa)
AS28_12568Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
AS28_12573Histone H3. (121 aa)
MYBBP1AMyb-binding protein 1A-like. (1124 aa)
POLR2HDNA-directed RNA polymerases I, II, and III subunit RPABC3. (126 aa)
AS28_09607Nucleolar RNA helicase 2. (289 aa)
DEKProtein DEK. (367 aa)
BAZ1BTyrosine-protein kinase BAZ1B. (1456 aa)
AS28_07752Histone H2B; Belongs to the histone H2B family. (126 aa)
H3F3BHistone H3; Belongs to the histone H3 family. (136 aa)
AS28_03911DNA-directed RNA polymerases I, II, and III subunit RPABC4. (55 aa)
AS28_11535DNA-directed RNA polymerases I, II, and III subunit RPABC5. (67 aa)
POLR1ADNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1671 aa)
TWISTNBDNA-directed RNA polymerase I subunit RPA43. (249 aa)
KAT2BHistone acetyltransferase KAT2B. (731 aa)
AS28_14622Histone H2A; Belongs to the histone H2A family. (104 aa)
SMARCA1Putative global transcription activator SNF2L1. (982 aa)
POLR1BDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1020 aa)
SMARCA5SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5. (959 aa)
AS28_08341Histone H2B; Belongs to the histone H2B family. (98 aa)
POLR2EDNA-directed RNA polymerases I, II, and III subunit RPABC1. (132 aa)
TAF1BTATA box-binding protein-associated factor RNA polymerase I subunit B. (572 aa)
AS28_12563Histone H2B; Belongs to the histone H2B family. (126 aa)
AS28_12570Histone H3. (96 aa)
TBPTATA-box-binding protein. (299 aa)
AS28_05161DNA-directed RNA polymerases I and III subunit RPAC1. (266 aa)
Your Current Organism:
Pygoscelis adeliae
NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia
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