45 items (Pygoscelis adeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AS28_11188	Ras-related GTP-binding protein A. (314 aa)
	SLC39A13	Zinc transporter ZIP13. (366 aa)
	UBB	Polyubiquitin. (290 aa)
	AS28_07061	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family. (125 aa)
	UBE2K	Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family. (179 aa)
	UBE2H	Ubiquitin-conjugating enzyme E2 H; Belongs to the ubiquitin-conjugating enzyme family. (165 aa)
	YIPF5	Protein YIPF. (210 aa)
	CDC34	Ubiquitin-conjugating enzyme E2 R1; Belongs to the ubiquitin-conjugating enzyme family. (178 aa)
	PEX2	Peroxisome biogenesis factor 2. (302 aa)
	RAD18	E3 ubiquitin-protein ligase RAD18. (427 aa)
	AKTIP	AKT-interacting protein. (293 aa)
	PEX10	Peroxisome biogenesis factor 10. (290 aa)
	PCNA	Proliferating cell nuclear antigen. (190 aa)
	PEX13	Peroxisomal membrane protein PEX13. (361 aa)
	PEX14	Peroxisomal membrane protein PEX14. (351 aa)
	VIMP	Selenoprotein S. (119 aa)
	RPS27A	Ubiquitin-40S ribosomal protein S27a. (141 aa)
	UBE2G1	Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family. (129 aa)
	UCHL3	Ubiquitin carboxyl-terminal hydrolase. (213 aa)
	RTF1	RNA polymerase-associated protein RTF1. (641 aa)
	UBE2W	Ubiquitin-conjugating enzyme E2 W. (142 aa)
	SHPRH	E3 ubiquitin-protein ligase SHPRH. (1694 aa)
	UBE2A	Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family. (102 aa)
	WDR61	WD repeat-containing protein 61. (301 aa)
	UBE2D1	Ubiquitin-conjugating enzyme E2 D1; Belongs to the ubiquitin-conjugating enzyme family. (126 aa)
	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2. (138 aa)
	UBE2D3	Ubiquitin-conjugating enzyme E2 D3; Belongs to the ubiquitin-conjugating enzyme family. (118 aa)
	WAC	WW domain-containing adapter protein with coiled-coil. (604 aa)
	OTULIN	Ubiquitin thioesterase otulin. (300 aa)
	PEX5L	PEX5-related protein. (602 aa)
	RNF20	E3 ubiquitin protein ligase. (984 aa)
	FAM105A	Inactive ubiquitin thioesterase FAM105A. (333 aa)
	TMEM129	Transmembrane protein 129. (295 aa)
	UBA6	Ubiquitin-like modifier-activating enzyme 6. (1008 aa)
	AS28_05149	Protein YIPF. (218 aa)
	YIPF7	Protein YIPF7. (258 aa)
	RNF144A	RBR-type E3 ubiquitin transferase. (292 aa)
	UBE2R2	Ubiquitin-conjugating enzyme E2 R2; Belongs to the ubiquitin-conjugating enzyme family. (181 aa)
	CINP	Cyclin-dependent kinase 2-interacting protein. (209 aa)
	USP9X	Putative ubiquitin carboxyl-terminal hydrolase FAF-X; Belongs to the peptidase C19 family. (2552 aa)
	UBE2T	Ubiquitin-conjugating enzyme E2 T; Belongs to the ubiquitin-conjugating enzyme family. (131 aa)
	UBE2G2	Ubiquitin-conjugating enzyme E2 G2; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
	AS28_05818	Helicase-like transcription factor. (972 aa)
	AS28_08198	Ubiquitin-conjugating enzyme E2 B; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	BCL10	B-cell lymphoma/leukemia 10. (218 aa)

Your Current Organism:

Pygoscelis adeliae

NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKTIP	UBE2H	A0A093NXQ5	A0A093PIM3	AKT-interacting protein.	Ubiquitin-conjugating enzyme E2 H; Belongs to the ubiquitin-conjugating enzyme family.	0.452
AS28_05818	AS28_08198	A0A093NQ84	A0A093NQ00	Helicase-like transcription factor.	Ubiquitin-conjugating enzyme E2 B; Belongs to the ubiquitin-conjugating enzyme family.	0.635
AS28_05818	PCNA	A0A093NQ84	A0A093NX18	Helicase-like transcription factor.	Proliferating cell nuclear antigen.	0.931
AS28_05818	RAD18	A0A093NQ84	A0A093R043	Helicase-like transcription factor.	E3 ubiquitin-protein ligase RAD18.	0.953
AS28_05818	RPS27A	A0A093NQ84	A0A093NGN6	Helicase-like transcription factor.	Ubiquitin-40S ribosomal protein S27a.	0.562
AS28_05818	UBB	A0A093NQ84	A0A093PDK8	Helicase-like transcription factor.	Polyubiquitin.	0.562
AS28_05818	UBE2A	A0A093NQ84	A0A093NNJ6	Helicase-like transcription factor.	Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family.	0.635
AS28_05818	UBE2V2	A0A093NQ84	A0A093P7D3	Helicase-like transcription factor.	Ubiquitin-conjugating enzyme E2 variant 2.	0.940
AS28_07061	AS28_08198	A0A093PFJ6	A0A093NQ00	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2 B; Belongs to the ubiquitin-conjugating enzyme family.	0.565
AS28_07061	CDC34	A0A093PFJ6	A0A093PKB4	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-conjugating enzyme E2 R1; Belongs to the ubiquitin-conjugating enzyme family.	0.427
AS28_07061	PCNA	A0A093PFJ6	A0A093NX18	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	Proliferating cell nuclear antigen.	0.571
AS28_07061	PEX10	A0A093PFJ6	A0A093NX68	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	Peroxisome biogenesis factor 10.	0.708
AS28_07061	PEX13	A0A093PFJ6	A0A093NV58	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	Peroxisomal membrane protein PEX13.	0.683
AS28_07061	PEX14	A0A093PFJ6	A0A093NUQ2	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	Peroxisomal membrane protein PEX14.	0.649
AS28_07061	PEX2	A0A093PFJ6	A0A093QWA4	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	Peroxisome biogenesis factor 2.	0.531
AS28_07061	PEX5L	A0A093PFJ6	A0A093NZP7	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	PEX5-related protein.	0.644
AS28_07061	RAD18	A0A093PFJ6	A0A093R043	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	E3 ubiquitin-protein ligase RAD18.	0.597
AS28_07061	RNF20	A0A093PFJ6	A0A093P193	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	E3 ubiquitin protein ligase.	0.481
AS28_07061	RPS27A	A0A093PFJ6	A0A093NGN6	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-40S ribosomal protein S27a.	0.799
AS28_07061	SHPRH	A0A093PFJ6	A0A093N8J5	Ubiquitin-conjugating enzyme E2 D2; Belongs to the ubiquitin-conjugating enzyme family.	E3 ubiquitin-protein ligase SHPRH.	0.437