55 items (Pygoscelis adeliae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	SOD2	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (215 aa)
	HAO2	Hydroxyacid oxidase 2. (348 aa)
	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic. (414 aa)
	GSTK1	Glutathione S-transferase kappa 1. (203 aa)
	MVK	Mevalonate kinase; Catalyzes the phosphorylation of mevalonate to mevalonate 5- phosphate, a key step in isoprenoid and cholesterol biosynthesis. Belongs to the GHMP kinase family. Mevalonate kinase subfamily. (306 aa)
	AMACR	Alpha-methylacyl-CoA racemase. (300 aa)
	NOS2	Nitric oxide synthase, inducible. (1141 aa)
	ABCD4	ATP-binding cassette sub-family D member 4. (591 aa)
	CAT	Catalase; Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide. (507 aa)
	PEX11G	Peroxisomal membrane protein 11C. (153 aa)
	DECR2	Peroxisomal 2,4-dienoyl-CoA reductase. (228 aa)
	ACOT8	Acyl-coenzyme A thioesterase 8. (231 aa)
	PEX3	Peroxisomal biogenesis factor 3. (345 aa)
	PECR	Peroxisomal trans-2-enoyl-CoA reductase. (266 aa)
	ABCD3	ATP-binding cassette sub-family D member 3. (621 aa)
	PXMP4	Peroxisomal membrane protein 4. (174 aa)
	ACSL3	Long-chain-fatty-acid--CoA ligase 3. (709 aa)
	PEX14	Peroxisomal membrane protein PEX14. (351 aa)
	PEX13	Peroxisomal membrane protein PEX13. (361 aa)
	ACOX2	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family. (658 aa)
	DDO	D-aspartate oxidase. (341 aa)
	ECI2	ACB domain-containing protein. (379 aa)
	HACL1	2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family. (508 aa)
	PRDX1	Peroxiredoxin-1. (201 aa)
	ACSL5	Long-chain-fatty-acid--CoA ligase 5. (683 aa)
	PEX10	Peroxisome biogenesis factor 10. (290 aa)
	PEX5L	PEX5-related protein. (602 aa)
	SOD1	Superoxide dismutase [Cu-Zn]. (132 aa)
	NUDT7	Peroxisomal coenzyme A diphosphatase NUDT7. (180 aa)
	GNPAT	Dihydroxyacetone phosphate acyltransferase. (683 aa)
	ACSL6	Long-chain-fatty-acid--CoA ligase 6. (708 aa)
	PEX1	Peroxisome biogenesis factor 1. (1250 aa)
	PEX11A	Peroxisomal membrane protein 11A. (227 aa)
	ABCD2	ATP-binding cassette sub-family D member 2. (679 aa)
	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1. (625 aa)
	PEX6	Peroxisome assembly factor 2; Belongs to the AAA ATPase family. (673 aa)
	ACSL4	Long-chain-fatty-acid--CoA ligase 4. (711 aa)
	PEX16	Peroxisomal membrane protein PEX16. (264 aa)
	HMGCLL1	3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic. (307 aa)
	HMGCL	Pyruvate carboxyltransferase domain-containing protein. (298 aa)
	MLYCD	MCD domain-containing protein. (95 aa)
	SLC25A17	Peroxisomal membrane protein PMP34; Belongs to the mitochondrial carrier (TC 2.A.29) family. (289 aa)
	AGPS	Alkylglycerone-phosphate synthase; Catalyzes the exchange of an acyl for a long-chain alkyl group and the formation of the ether bond in the biosynthesis of ether phospholipids; Belongs to the FAD-binding oxidoreductase/transferase type 4 family. (572 aa)
	XDH	Xanthine dehydrogenase/oxidase. (1359 aa)
	FAR1	Fatty acyl-CoA reductase; Catalyzes the reduction of fatty acyl-CoA to fatty alcohols. (519 aa)
	PEX2	Peroxisome biogenesis factor 2. (302 aa)
	HSD17B4	Peroxisomal multifunctional enzyme type 2. (718 aa)
	PEX7	Peroxisomal targeting signal 2 receptor. (273 aa)
	SCP2	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (521 aa)
	NUDT19	Uncharacterized protein. (146 aa)
	AS28_04726	Phytanoyl-CoA dioxygenase, peroxisomal. (307 aa)
	CRAT	Carnitine O-acetyltransferase; Belongs to the carnitine/choline acetyltransferase family. (616 aa)
	EHHADH	Peroxisomal bifunctional enzyme; Belongs to the enoyl-CoA hydratase/isomerase family. (164 aa)
	NUDT12	Peroxisomal NADH pyrophosphatase NUDT12. (464 aa)
	ACOX3	Peroxisomal acyl-coenzyme A oxidase 3. (683 aa)

Your Current Organism:

Pygoscelis adeliae

NCBI taxonomy Id: 9238
Other names: Adelie penguin, P. adeliae, Pygoscelis adelia

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCD2	ABCD3	A0A093P515	A0A093NPV5	ATP-binding cassette sub-family D member 2.	ATP-binding cassette sub-family D member 3.	0.981
ABCD2	ABCD4	A0A093P515	A0A093NG72	ATP-binding cassette sub-family D member 2.	ATP-binding cassette sub-family D member 4.	0.963
ABCD2	ACSL3	A0A093P515	A0A093NUG4	ATP-binding cassette sub-family D member 2.	Long-chain-fatty-acid--CoA ligase 3.	0.460
ABCD2	ACSL4	A0A093P515	A0A093P6H6	ATP-binding cassette sub-family D member 2.	Long-chain-fatty-acid--CoA ligase 4.	0.460
ABCD2	ECI2	A0A093P515	A0A093NVJ8	ATP-binding cassette sub-family D member 2.	ACB domain-containing protein.	0.722
ABCD2	HSD17B4	A0A093P515	A0A093QX97	ATP-binding cassette sub-family D member 2.	Peroxisomal multifunctional enzyme type 2.	0.495
ABCD2	PEX10	A0A093P515	A0A093NX68	ATP-binding cassette sub-family D member 2.	Peroxisome biogenesis factor 10.	0.400
ABCD2	PEX11A	A0A093P515	A0A093P4N6	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein 11A.	0.790
ABCD2	PEX11G	A0A093P515	A0A093NMM7	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein 11C.	0.670
ABCD2	PEX13	A0A093P515	A0A093NV58	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PEX13.	0.800
ABCD2	PEX14	A0A093P515	A0A093NUQ2	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PEX14.	0.744
ABCD2	PEX16	A0A093P515	A0A093PG54	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PEX16.	0.683
ABCD2	PEX2	A0A093P515	A0A093QWA4	ATP-binding cassette sub-family D member 2.	Peroxisome biogenesis factor 2.	0.691
ABCD2	PEX3	A0A093P515	A0A093NP01	ATP-binding cassette sub-family D member 2.	Peroxisomal biogenesis factor 3.	0.763
ABCD2	PEX5L	A0A093P515	A0A093NZP7	ATP-binding cassette sub-family D member 2.	PEX5-related protein.	0.517
ABCD2	PEX6	A0A093P515	A0A093P5M5	ATP-binding cassette sub-family D member 2.	Peroxisome assembly factor 2; Belongs to the AAA ATPase family.	0.474
ABCD2	PEX7	A0A093P515	A0A093QY82	ATP-binding cassette sub-family D member 2.	Peroxisomal targeting signal 2 receptor.	0.495
ABCD2	PXMP4	A0A093P515	A0A093NTB9	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein 4.	0.621
ABCD2	SCP2	A0A093P515	A0A093R093	ATP-binding cassette sub-family D member 2.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.758
ABCD2	SLC25A17	A0A093P515	A0A093QQY0	ATP-binding cassette sub-family D member 2.	Peroxisomal membrane protein PMP34; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.715