23 items (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_10243	U11/U12 small nuclear ribonucleoprotein 35 kDa protein. (244 aa)
	N300_09472	Small nuclear ribonucleoprotein G. (76 aa)
	N300_10380	Pre-mRNA branch site protein p14. (115 aa)
	N300_06667	Small nuclear ribonucleoprotein F. (65 aa)
	N300_08080	U2 small nuclear ribonucleoprotein A. (228 aa)
	N300_11247	116 kDa U5 small nuclear ribonucleoprotein component. (972 aa)
	N300_05459	U5 small nuclear ribonucleoprotein 200 kDa helicase. (185 aa)
	N300_15596	Small nuclear ribonucleoprotein-associated protein B. (188 aa)
	N300_11669	Splicing factor 3A subunit 2. (205 aa)
	N300_13180	PHD finger-like domain-containing protein 5A. (93 aa)
	N300_10917	Splicing factor 3B subunit 4. (244 aa)
	N300_03734	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (76 aa)
	N300_11670	Uncharacterized protein. (111 aa)
	N300_09423	U5 small nuclear ribonucleoprotein 40 kDa protein. (313 aa)
	N300_03752	U1 small nuclear ribonucleoprotein C. (157 aa)
	N300_11360	U2 small nuclear ribonucleoprotein B. (226 aa)
	N300_15273	Thioredoxin-like 4A. (129 aa)
	N300_05877	Splicing factor 3A subunit 3. (457 aa)
	N300_10538	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	N300_01514	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (117 aa)
	N300_03468	Pre-mRNA-processing-splicing factor 8. (2318 aa)
	N300_15673	Pre-mRNA-processing factor 6. (924 aa)
	N300_08229	Small nuclear ribonucleoprotein Sm D3. (126 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_01514	N300_03468	A0A091IL90	A0A091IQB6	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Pre-mRNA-processing-splicing factor 8.	0.995
N300_01514	N300_03734	A0A091IL90	A0A091IAC4	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
N300_01514	N300_03752	A0A091IL90	A0A091ICJ4	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	U1 small nuclear ribonucleoprotein C.	0.992
N300_01514	N300_05459	A0A091IL90	A0A091I3W2	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	U5 small nuclear ribonucleoprotein 200 kDa helicase.	0.994
N300_01514	N300_05877	A0A091IL90	A0A091IHP8	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3A subunit 3.	0.995
N300_01514	N300_06667	A0A091IL90	A0A091HUI0	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein F.	0.999
N300_01514	N300_08080	A0A091IL90	A0A091HVR0	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	U2 small nuclear ribonucleoprotein A.	0.996
N300_01514	N300_08229	A0A091IL90	A0A091J7S9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
N300_01514	N300_09423	A0A091IL90	A0A091IAT6	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	U5 small nuclear ribonucleoprotein 40 kDa protein.	0.977
N300_01514	N300_09472	A0A091IL90	A0A091HK12	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
N300_01514	N300_10243	A0A091IL90	A0A091HHJ3	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	U11/U12 small nuclear ribonucleoprotein 35 kDa protein.	0.996
N300_01514	N300_10380	A0A091IL90	A0A091HTM7	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Pre-mRNA branch site protein p14.	0.954
N300_01514	N300_10538	A0A091IL90	A0A091IKU6	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.981
N300_01514	N300_10917	A0A091IL90	A0A091IA91	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3B subunit 4.	0.963
N300_01514	N300_11247	A0A091IL90	A0A091I1F0	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	116 kDa U5 small nuclear ribonucleoprotein component.	0.997
N300_01514	N300_11360	A0A091IL90	A0A091ICM3	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	U2 small nuclear ribonucleoprotein B.	0.996
N300_01514	N300_11669	A0A091IL90	A0A091I793	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3A subunit 2.	0.984
N300_01514	N300_11670	A0A091IL90	A0A091IAR7	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.880
N300_01514	N300_13180	A0A091IL90	A0A091I8I9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	PHD finger-like domain-containing protein 5A.	0.974
N300_01514	N300_15273	A0A091IL90	A0A091IG25	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Thioredoxin-like 4A.	0.939