(5 nodes) U4 snRNP network (Calypte anna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_09472	Small nuclear ribonucleoprotein G. (76 aa)
	N300_06667	Small nuclear ribonucleoprotein F. (65 aa)
	N300_03734	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (76 aa)
	N300_01514	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (117 aa)
	N300_08229	Small nuclear ribonucleoprotein Sm D3. (126 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_01514	N300_03734	A0A091IL90	A0A091IAC4	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
N300_01514	N300_06667	A0A091IL90	A0A091HUI0	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein F.	0.999
N300_01514	N300_08229	A0A091IL90	A0A091J7S9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
N300_01514	N300_09472	A0A091IL90	A0A091HK12	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
N300_03734	N300_01514	A0A091IAC4	A0A091IL90	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
N300_03734	N300_06667	A0A091IAC4	A0A091HUI0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein F.	0.999
N300_03734	N300_08229	A0A091IAC4	A0A091J7S9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D3.	0.999
N300_03734	N300_09472	A0A091IAC4	A0A091HK12	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
N300_06667	N300_01514	A0A091HUI0	A0A091IL90	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
N300_06667	N300_03734	A0A091HUI0	A0A091IAC4	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
N300_06667	N300_08229	A0A091HUI0	A0A091J7S9	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein Sm D3.	0.999
N300_06667	N300_09472	A0A091HUI0	A0A091HK12	Small nuclear ribonucleoprotein F.	Small nuclear ribonucleoprotein G.	0.999
N300_08229	N300_01514	A0A091J7S9	A0A091IL90	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
N300_08229	N300_03734	A0A091J7S9	A0A091IAC4	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
N300_08229	N300_06667	A0A091J7S9	A0A091HUI0	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein F.	0.999
N300_08229	N300_09472	A0A091J7S9	A0A091HK12	Small nuclear ribonucleoprotein Sm D3.	Small nuclear ribonucleoprotein G.	0.999
N300_09472	N300_01514	A0A091HK12	A0A091IL90	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
N300_09472	N300_03734	A0A091HK12	A0A091IAC4	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
N300_09472	N300_06667	A0A091HK12	A0A091HUI0	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein F.	0.999
N300_09472	N300_08229	A0A091HK12	A0A091J7S9	Small nuclear ribonucleoprotein G.	Small nuclear ribonucleoprotein Sm D3.	0.999