13 items (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_06072	DNA polymerase. (1461 aa)
	N300_06707	Origin recognition complex subunit 2. (566 aa)
	N300_08184	Cell division control protein 45. (553 aa)
	N300_04009	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication. (858 aa)
	N300_01145	Origin recognition complex subunit 3. (704 aa)
	N300_02669	ATP-dependent RNA helicase A. (855 aa)
	N300_13936	Putative ATP-dependent RNA helicase DDX11-like 8. (833 aa)
	N300_02670	ATP-dependent RNA helicase A. (372 aa)
	N300_00492	Protein MCM10. (859 aa)
	N300_00441	Origin recognition complex subunit 5. (433 aa)
	N300_06126	Cell division control protein 6. (539 aa)
	N300_08601	DNA helicase; Belongs to the MCM family. (734 aa)
	N300_04422	DNA helicase; Belongs to the MCM family. (888 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_00441	N300_00492	A0A091HVE8	A0A091HYU2	Origin recognition complex subunit 5.	Protein MCM10.	0.916
N300_00441	N300_01145	A0A091HVE8	A0A091I3N3	Origin recognition complex subunit 5.	Origin recognition complex subunit 3.	0.999
N300_00441	N300_04009	A0A091HVE8	A0A091I9L5	Origin recognition complex subunit 5.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.998
N300_00441	N300_04422	A0A091HVE8	A0A091HGD7	Origin recognition complex subunit 5.	DNA helicase; Belongs to the MCM family.	0.998
N300_00441	N300_06072	A0A091HVE8	A0A091HS64	Origin recognition complex subunit 5.	DNA polymerase.	0.771
N300_00441	N300_06126	A0A091HVE8	A0A091HMJ5	Origin recognition complex subunit 5.	Cell division control protein 6.	0.998
N300_00441	N300_06707	A0A091HVE8	A0A091IS80	Origin recognition complex subunit 5.	Origin recognition complex subunit 2.	0.999
N300_00441	N300_08184	A0A091HVE8	A0A091IJR5	Origin recognition complex subunit 5.	Cell division control protein 45.	0.951
N300_00441	N300_08601	A0A091HVE8	A0A091HGL6	Origin recognition complex subunit 5.	DNA helicase; Belongs to the MCM family.	0.998
N300_00492	N300_00441	A0A091HYU2	A0A091HVE8	Protein MCM10.	Origin recognition complex subunit 5.	0.916
N300_00492	N300_01145	A0A091HYU2	A0A091I3N3	Protein MCM10.	Origin recognition complex subunit 3.	0.942
N300_00492	N300_04009	A0A091HYU2	A0A091I9L5	Protein MCM10.	Origin recognition complex subunit 1; Component of the origin recognition complex (ORC) that binds origins of replication. DNA-binding is ATP-dependent, however specific DNA sequences that define origins of replication have not been identified so far. ORC is required to assemble the pre-replication complex necessary to initiate DNA replication.	0.962
N300_00492	N300_04422	A0A091HYU2	A0A091HGD7	Protein MCM10.	DNA helicase; Belongs to the MCM family.	0.996
N300_00492	N300_06072	A0A091HYU2	A0A091HS64	Protein MCM10.	DNA polymerase.	0.954
N300_00492	N300_06126	A0A091HYU2	A0A091HMJ5	Protein MCM10.	Cell division control protein 6.	0.994
N300_00492	N300_06707	A0A091HYU2	A0A091IS80	Protein MCM10.	Origin recognition complex subunit 2.	0.985
N300_00492	N300_08184	A0A091HYU2	A0A091IJR5	Protein MCM10.	Cell division control protein 45.	0.996
N300_00492	N300_08601	A0A091HYU2	A0A091HGL6	Protein MCM10.	DNA helicase; Belongs to the MCM family.	0.992
N300_01145	N300_00441	A0A091I3N3	A0A091HVE8	Origin recognition complex subunit 3.	Origin recognition complex subunit 5.	0.999
N300_01145	N300_00492	A0A091I3N3	A0A091HYU2	Origin recognition complex subunit 3.	Protein MCM10.	0.942