14 items (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_09472	Small nuclear ribonucleoprotein G. (76 aa)
	N300_10380	Pre-mRNA branch site protein p14. (115 aa)
	N300_08080	U2 small nuclear ribonucleoprotein A. (228 aa)
	N300_15596	Small nuclear ribonucleoprotein-associated protein B. (188 aa)
	N300_11669	Splicing factor 3A subunit 2. (205 aa)
	N300_13180	PHD finger-like domain-containing protein 5A. (93 aa)
	N300_03734	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (76 aa)
	N300_11670	Uncharacterized protein. (111 aa)
	N300_05877	Splicing factor 3A subunit 3. (457 aa)
	N300_10538	Splicing factor 3B subunit 5; Belongs to the SF3B5 family. (86 aa)
	N300_01514	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (117 aa)
	N300_04749	HIV Tat-specific factor 1. (394 aa)
	N300_11297	RNA-binding motif protein, X-linked 2. (118 aa)
	N300_08229	Small nuclear ribonucleoprotein Sm D3. (126 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_01514	N300_03734	A0A091IL90	A0A091IAC4	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
N300_01514	N300_04749	A0A091IL90	A0A091IM97	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	HIV Tat-specific factor 1.	0.634
N300_01514	N300_05877	A0A091IL90	A0A091IHP8	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3A subunit 3.	0.995
N300_01514	N300_08080	A0A091IL90	A0A091HVR0	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	U2 small nuclear ribonucleoprotein A.	0.996
N300_01514	N300_08229	A0A091IL90	A0A091J7S9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
N300_01514	N300_09472	A0A091IL90	A0A091HK12	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
N300_01514	N300_10380	A0A091IL90	A0A091HTM7	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Pre-mRNA branch site protein p14.	0.954
N300_01514	N300_10538	A0A091IL90	A0A091IKU6	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3B subunit 5; Belongs to the SF3B5 family.	0.981
N300_01514	N300_11297	A0A091IL90	A0A091J1G6	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	RNA-binding motif protein, X-linked 2.	0.890
N300_01514	N300_11669	A0A091IL90	A0A091I793	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Splicing factor 3A subunit 2.	0.984
N300_01514	N300_11670	A0A091IL90	A0A091IAR7	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.880
N300_01514	N300_13180	A0A091IL90	A0A091I8I9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	PHD finger-like domain-containing protein 5A.	0.974
N300_01514	N300_15596	A0A091IL90	A0A091I6X8	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein-associated protein B.	0.992
N300_03734	N300_01514	A0A091IAC4	A0A091IL90	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.999
N300_03734	N300_04749	A0A091IAC4	A0A091IM97	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	HIV Tat-specific factor 1.	0.778
N300_03734	N300_05877	A0A091IAC4	A0A091IHP8	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Splicing factor 3A subunit 3.	0.986
N300_03734	N300_08080	A0A091IAC4	A0A091HVR0	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	U2 small nuclear ribonucleoprotein A.	0.997
N300_03734	N300_08229	A0A091IAC4	A0A091J7S9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D3.	0.999
N300_03734	N300_09472	A0A091IAC4	A0A091HK12	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
N300_03734	N300_10380	A0A091IAC4	A0A091HTM7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Pre-mRNA branch site protein p14.	0.985