(12 nodes) SMN-Sm protein complex network (Calypte anna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_09472	Small nuclear ribonucleoprotein G. (76 aa)
	N300_08229	Small nuclear ribonucleoprotein Sm D3. (126 aa)
	N300_01514	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (117 aa)
	N300_10479	Putative ATP-dependent RNA helicase DDX20; Belongs to the DEAD box helicase family. (702 aa)
	N300_03734	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (76 aa)
	N300_15596	Small nuclear ribonucleoprotein-associated protein B. (188 aa)
	N300_02361	Gem-associated protein 8. (226 aa)
	N300_11173	Gem-associated protein 4. (1060 aa)
	N300_06667	Small nuclear ribonucleoprotein F. (65 aa)
	N300_05371	Gem-associated protein 6. (167 aa)
	N300_05679	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family. (263 aa)
	N300_10555	Gem-associated protein 5. (1471 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_01514	N300_02361	A0A091IL90	A0A091I046	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Gem-associated protein 8.	0.669
N300_01514	N300_03734	A0A091IL90	A0A091IAC4	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
N300_01514	N300_05371	A0A091IL90	A0A091HPC6	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Gem-associated protein 6.	0.627
N300_01514	N300_05679	A0A091IL90	A0A091HMP3	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.973
N300_01514	N300_06667	A0A091IL90	A0A091HUI0	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein F.	0.999
N300_01514	N300_08229	A0A091IL90	A0A091J7S9	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein Sm D3.	0.999
N300_01514	N300_09472	A0A091IL90	A0A091HK12	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein G.	0.999
N300_01514	N300_10479	A0A091IL90	A0A091IFC3	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Putative ATP-dependent RNA helicase DDX20; Belongs to the DEAD box helicase family.	0.832
N300_01514	N300_10555	A0A091IL90	A0A091HME1	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Gem-associated protein 5.	0.788
N300_01514	N300_11173	A0A091IL90	A0A091HX51	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Gem-associated protein 4.	0.597
N300_01514	N300_15596	A0A091IL90	A0A091I6X8	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	Small nuclear ribonucleoprotein-associated protein B.	0.992
N300_02361	N300_01514	A0A091I046	A0A091IL90	Gem-associated protein 8.	Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.	0.669
N300_02361	N300_03734	A0A091I046	A0A091IAC4	Gem-associated protein 8.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.765
N300_02361	N300_05371	A0A091I046	A0A091HPC6	Gem-associated protein 8.	Gem-associated protein 6.	0.779
N300_02361	N300_05679	A0A091I046	A0A091HMP3	Gem-associated protein 8.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.965
N300_02361	N300_06667	A0A091I046	A0A091HUI0	Gem-associated protein 8.	Small nuclear ribonucleoprotein F.	0.794
N300_02361	N300_08229	A0A091I046	A0A091J7S9	Gem-associated protein 8.	Small nuclear ribonucleoprotein Sm D3.	0.665
N300_02361	N300_09472	A0A091I046	A0A091HK12	Gem-associated protein 8.	Small nuclear ribonucleoprotein G.	0.671
N300_02361	N300_10479	A0A091I046	A0A091IFC3	Gem-associated protein 8.	Putative ATP-dependent RNA helicase DDX20; Belongs to the DEAD box helicase family.	0.964
N300_02361	N300_10555	A0A091I046	A0A091HME1	Gem-associated protein 8.	Gem-associated protein 5.	0.926