13 items (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_00519	Splicing factor 45. (401 aa)
	N300_10850	DnaJ subfamily C member 8. (228 aa)
	N300_15513	Lens epithelium-derived growth factor. (562 aa)
	N300_03752	U1 small nuclear ribonucleoprotein C. (157 aa)
	N300_11990	Pre-mRNA-processing factor 40 A. (879 aa)
	N300_08212	Splicing factor, suppressor of white-apricot. (927 aa)
	N300_15187	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (108 aa)
	N300_12604	Serine/threonine-protein kinase PRP4. (992 aa)
	N300_07163	M7GpppX diphosphatase. (269 aa)
	N300_01698	Spliceosome-associated protein CWC15. (230 aa)
	N300_10579	Pre-mRNA-splicing factor RBM22. (402 aa)
	N300_13112	WW domain-binding protein 11. (651 aa)
	N300_13304	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (125 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_00519	N300_01698	A0A091HWP4	A0A091J2I6	Splicing factor 45.	Spliceosome-associated protein CWC15.	0.648
N300_01698	N300_00519	A0A091J2I6	A0A091HWP4	Spliceosome-associated protein CWC15.	Splicing factor 45.	0.648
N300_01698	N300_10579	A0A091J2I6	A0A091HKM9	Spliceosome-associated protein CWC15.	Pre-mRNA-splicing factor RBM22.	0.971
N300_01698	N300_13112	A0A091J2I6	A0A091HLN4	Spliceosome-associated protein CWC15.	WW domain-binding protein 11.	0.947
N300_01698	N300_13304	A0A091J2I6	A0A091HX20	Spliceosome-associated protein CWC15.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.811
N300_01698	N300_15187	A0A091J2I6	A0A091IHW9	Spliceosome-associated protein CWC15.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.811
N300_03752	N300_11990	A0A091ICJ4	A0A091IGH1	U1 small nuclear ribonucleoprotein C.	Pre-mRNA-processing factor 40 A.	0.431
N300_03752	N300_12604	A0A091ICJ4	A0A091IJV7	U1 small nuclear ribonucleoprotein C.	Serine/threonine-protein kinase PRP4.	0.731
N300_03752	N300_13304	A0A091ICJ4	A0A091HX20	U1 small nuclear ribonucleoprotein C.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.902
N300_03752	N300_15187	A0A091ICJ4	A0A091IHW9	U1 small nuclear ribonucleoprotein C.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.902
N300_10579	N300_01698	A0A091HKM9	A0A091J2I6	Pre-mRNA-splicing factor RBM22.	Spliceosome-associated protein CWC15.	0.971
N300_10579	N300_13112	A0A091HKM9	A0A091HLN4	Pre-mRNA-splicing factor RBM22.	WW domain-binding protein 11.	0.696
N300_10579	N300_13304	A0A091HKM9	A0A091HX20	Pre-mRNA-splicing factor RBM22.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.790
N300_10579	N300_15187	A0A091HKM9	A0A091IHW9	Pre-mRNA-splicing factor RBM22.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.790
N300_10850	N300_11990	A0A091I3T9	A0A091IGH1	DnaJ subfamily C member 8.	Pre-mRNA-processing factor 40 A.	0.558
N300_11990	N300_03752	A0A091IGH1	A0A091ICJ4	Pre-mRNA-processing factor 40 A.	U1 small nuclear ribonucleoprotein C.	0.431
N300_11990	N300_10850	A0A091IGH1	A0A091I3T9	Pre-mRNA-processing factor 40 A.	DnaJ subfamily C member 8.	0.558
N300_11990	N300_12604	A0A091IGH1	A0A091IJV7	Pre-mRNA-processing factor 40 A.	Serine/threonine-protein kinase PRP4.	0.698
N300_11990	N300_13304	A0A091IGH1	A0A091HX20	Pre-mRNA-processing factor 40 A.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.421
N300_11990	N300_15187	A0A091IGH1	A0A091IHW9	Pre-mRNA-processing factor 40 A.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.421