8 items (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_14878	COP9 signalosome complex subunit 5. (286 aa)
	N300_11795	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family. (236 aa)
	N300_07508	AMSH-like protease. (108 aa)
	N300_15812	STAM-binding protein. (429 aa)
	N300_08502	Eukaryotic translation initiation factor 3 subunit H. (311 aa)
	N300_00616	Histone H2A deubiquitinase MYSM1. (795 aa)
	N300_09118	26S proteasome non-ATPase regulatory subunit 7. (298 aa)
	N300_10097	26S proteasome non-ATPase regulatory subunit 14. (310 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_00616	N300_07508	A0A091HMC6	A0A091IFW9	Histone H2A deubiquitinase MYSM1.	AMSH-like protease.	0.601
N300_00616	N300_08502	A0A091HMC6	A0A091HPZ3	Histone H2A deubiquitinase MYSM1.	Eukaryotic translation initiation factor 3 subunit H.	0.937
N300_00616	N300_09118	A0A091HMC6	A0A091HK92	Histone H2A deubiquitinase MYSM1.	26S proteasome non-ATPase regulatory subunit 7.	0.991
N300_00616	N300_11795	A0A091HMC6	A0A091JA38	Histone H2A deubiquitinase MYSM1.	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family.	0.607
N300_00616	N300_14878	A0A091HMC6	A0A091IHK8	Histone H2A deubiquitinase MYSM1.	COP9 signalosome complex subunit 5.	0.616
N300_00616	N300_15812	A0A091HMC6	A0A091ID77	Histone H2A deubiquitinase MYSM1.	STAM-binding protein.	0.601
N300_07508	N300_00616	A0A091IFW9	A0A091HMC6	AMSH-like protease.	Histone H2A deubiquitinase MYSM1.	0.601
N300_07508	N300_08502	A0A091IFW9	A0A091HPZ3	AMSH-like protease.	Eukaryotic translation initiation factor 3 subunit H.	0.864
N300_08502	N300_00616	A0A091HPZ3	A0A091HMC6	Eukaryotic translation initiation factor 3 subunit H.	Histone H2A deubiquitinase MYSM1.	0.937
N300_08502	N300_07508	A0A091HPZ3	A0A091IFW9	Eukaryotic translation initiation factor 3 subunit H.	AMSH-like protease.	0.864
N300_08502	N300_09118	A0A091HPZ3	A0A091HK92	Eukaryotic translation initiation factor 3 subunit H.	26S proteasome non-ATPase regulatory subunit 7.	0.917
N300_08502	N300_10097	A0A091HPZ3	A0A091HGB9	Eukaryotic translation initiation factor 3 subunit H.	26S proteasome non-ATPase regulatory subunit 14.	0.900
N300_08502	N300_11795	A0A091HPZ3	A0A091JA38	Eukaryotic translation initiation factor 3 subunit H.	Eukaryotic translation initiation factor 3 subunit F; Belongs to the eIF-3 subunit F family.	0.999
N300_08502	N300_14878	A0A091HPZ3	A0A091IHK8	Eukaryotic translation initiation factor 3 subunit H.	COP9 signalosome complex subunit 5.	0.904
N300_08502	N300_15812	A0A091HPZ3	A0A091ID77	Eukaryotic translation initiation factor 3 subunit H.	STAM-binding protein.	0.864
N300_09118	N300_00616	A0A091HK92	A0A091HMC6	26S proteasome non-ATPase regulatory subunit 7.	Histone H2A deubiquitinase MYSM1.	0.991
N300_09118	N300_08502	A0A091HK92	A0A091HPZ3	26S proteasome non-ATPase regulatory subunit 7.	Eukaryotic translation initiation factor 3 subunit H.	0.917
N300_09118	N300_10097	A0A091HK92	A0A091HGB9	26S proteasome non-ATPase regulatory subunit 7.	26S proteasome non-ATPase regulatory subunit 14.	0.999
N300_09118	N300_14878	A0A091HK92	A0A091IHK8	26S proteasome non-ATPase regulatory subunit 7.	COP9 signalosome complex subunit 5.	0.867
N300_10097	N300_08502	A0A091HGB9	A0A091HPZ3	26S proteasome non-ATPase regulatory subunit 14.	Eukaryotic translation initiation factor 3 subunit H.	0.900