6 items (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_04186	Inhibitor of growth protein. (220 aa)
	N300_11738	Paired amphipathic helix protein Sin3a. (1250 aa)
	N300_13942	Protein FAM60A. (221 aa)
	N300_01612	AT-rich interactive domain-containing protein 4A. (1241 aa)
	N300_05557	Mortality factor 4-like 1. (342 aa)
	N300_09792	AT-rich interactive domain-containing protein 4B. (1314 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_01612	N300_04186	A0A091ICY8	A0A091HT23	AT-rich interactive domain-containing protein 4A.	Inhibitor of growth protein.	0.832
N300_01612	N300_05557	A0A091ICY8	A0A091IG43	AT-rich interactive domain-containing protein 4A.	Mortality factor 4-like 1.	0.413
N300_01612	N300_09792	A0A091ICY8	A0A091ITF4	AT-rich interactive domain-containing protein 4A.	AT-rich interactive domain-containing protein 4B.	0.895
N300_01612	N300_11738	A0A091ICY8	A0A091I0V7	AT-rich interactive domain-containing protein 4A.	Paired amphipathic helix protein Sin3a.	0.996
N300_01612	N300_13942	A0A091ICY8	A0A091I274	AT-rich interactive domain-containing protein 4A.	Protein FAM60A.	0.765
N300_04186	N300_01612	A0A091HT23	A0A091ICY8	Inhibitor of growth protein.	AT-rich interactive domain-containing protein 4A.	0.832
N300_04186	N300_05557	A0A091HT23	A0A091IG43	Inhibitor of growth protein.	Mortality factor 4-like 1.	0.928
N300_04186	N300_09792	A0A091HT23	A0A091ITF4	Inhibitor of growth protein.	AT-rich interactive domain-containing protein 4B.	0.832
N300_04186	N300_11738	A0A091HT23	A0A091I0V7	Inhibitor of growth protein.	Paired amphipathic helix protein Sin3a.	0.692
N300_04186	N300_13942	A0A091HT23	A0A091I274	Inhibitor of growth protein.	Protein FAM60A.	0.633
N300_05557	N300_01612	A0A091IG43	A0A091ICY8	Mortality factor 4-like 1.	AT-rich interactive domain-containing protein 4A.	0.413
N300_05557	N300_04186	A0A091IG43	A0A091HT23	Mortality factor 4-like 1.	Inhibitor of growth protein.	0.928
N300_05557	N300_09792	A0A091IG43	A0A091ITF4	Mortality factor 4-like 1.	AT-rich interactive domain-containing protein 4B.	0.440
N300_05557	N300_11738	A0A091IG43	A0A091I0V7	Mortality factor 4-like 1.	Paired amphipathic helix protein Sin3a.	0.932
N300_05557	N300_13942	A0A091IG43	A0A091I274	Mortality factor 4-like 1.	Protein FAM60A.	0.455
N300_09792	N300_01612	A0A091ITF4	A0A091ICY8	AT-rich interactive domain-containing protein 4B.	AT-rich interactive domain-containing protein 4A.	0.895
N300_09792	N300_04186	A0A091ITF4	A0A091HT23	AT-rich interactive domain-containing protein 4B.	Inhibitor of growth protein.	0.832
N300_09792	N300_05557	A0A091ITF4	A0A091IG43	AT-rich interactive domain-containing protein 4B.	Mortality factor 4-like 1.	0.440
N300_09792	N300_11738	A0A091ITF4	A0A091I0V7	AT-rich interactive domain-containing protein 4B.	Paired amphipathic helix protein Sin3a.	0.996
N300_09792	N300_13942	A0A091ITF4	A0A091I274	AT-rich interactive domain-containing protein 4B.	Protein FAM60A.	0.776