10 items (Calypte anna) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_04333	WD repeat-containing protein 41. (425 aa)
	N300_09017	Smith-Magenis syndrome chromosomal region candidate 8. (790 aa)
	N300_15597	Engulfment and cell motility protein 2. (709 aa)
	N300_13676	Engulfment and cell motility protein 3. (681 aa)
	N300_00775	Translation initiation factor eIF-2B subunit gamma. (437 aa)
	N300_02240	Ragulator complex protein LAMTOR3. (121 aa)
	N300_03671	Ragulator complex protein LAMTOR5. (92 aa)
	N300_14496	Retrograde Golgi transport protein RGP1. (381 aa)
	N300_10928	Ragulator complex protein LAMTOR2. (88 aa)
	N300_04813	Engulfment and cell motility protein 1. (744 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_02240	N300_03671	A0A091HMV7	A0A091ICN1	Ragulator complex protein LAMTOR3.	Ragulator complex protein LAMTOR5.	0.998
N300_02240	N300_10928	A0A091HMV7	A0A091HLD4	Ragulator complex protein LAMTOR3.	Ragulator complex protein LAMTOR2.	0.999
N300_03671	N300_02240	A0A091ICN1	A0A091HMV7	Ragulator complex protein LAMTOR5.	Ragulator complex protein LAMTOR3.	0.998
N300_03671	N300_10928	A0A091ICN1	A0A091HLD4	Ragulator complex protein LAMTOR5.	Ragulator complex protein LAMTOR2.	0.998
N300_04333	N300_09017	A0A091IL71	A0A091I969	WD repeat-containing protein 41.	Smith-Magenis syndrome chromosomal region candidate 8.	0.987
N300_09017	N300_04333	A0A091I969	A0A091IL71	Smith-Magenis syndrome chromosomal region candidate 8.	WD repeat-containing protein 41.	0.987
N300_10928	N300_02240	A0A091HLD4	A0A091HMV7	Ragulator complex protein LAMTOR2.	Ragulator complex protein LAMTOR3.	0.999
N300_10928	N300_03671	A0A091HLD4	A0A091ICN1	Ragulator complex protein LAMTOR2.	Ragulator complex protein LAMTOR5.	0.998