(21 nodes) FERM conserved site network (Calypte anna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_02766	Tyrosine-protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class subfamily. (919 aa)
	N300_14584	Merlin. (552 aa)
	N300_03293	Band 4.1-like 1. (883 aa)
	N300_09232	FERM domain-containing protein 3. (548 aa)
	N300_15028	Talin-2. (2538 aa)
	N300_11698	Band 4.1-like 2. (965 aa)
	N300_01267	Radixin. (579 aa)
	N300_07191	FERM domain-containing protein 4B. (1033 aa)
	N300_08311	Band 4.1-like 4A. (649 aa)
	N300_05549	FERM domain-containing protein 5. (536 aa)
	N300_15169	FERM domain-containing protein 7. (338 aa)
	N300_15866	FERM, RhoGEF and pleckstrin domain-containing protein 2. (1028 aa)
	N300_06357	Fermitin family 1. (627 aa)
	N300_14352	Merlin. (443 aa)
	N300_09882	Moesin. (576 aa)
	N300_05323	Band 4.1-like 3. (1101 aa)
	N300_09625	Ezrin. (582 aa)
	N300_03610	Band 4.1-like 5. (576 aa)
	N300_10831	Protein 4.1. (869 aa)
	N300_05783	FERM, RhoGEF and pleckstrin domain-containing protein 1. (993 aa)
	N300_00485	FERM domain-containing protein 4A. (994 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_00485	N300_02766	A0A091HWK3	A0A091HUW3	FERM domain-containing protein 4A.	Tyrosine-protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class subfamily.	0.400
N300_01267	N300_03293	A0A091J6S3	A0A091HQ06	Radixin.	Band 4.1-like 1.	0.580
N300_01267	N300_09625	A0A091J6S3	A0A091I6Y8	Radixin.	Ezrin.	0.973
N300_01267	N300_09882	A0A091J6S3	A0A091IE58	Radixin.	Moesin.	0.964
N300_01267	N300_10831	A0A091J6S3	A0A091I2T3	Radixin.	Protein 4.1.	0.587
N300_02766	N300_00485	A0A091HUW3	A0A091HWK3	Tyrosine-protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class subfamily.	FERM domain-containing protein 4A.	0.400
N300_02766	N300_07191	A0A091HUW3	A0A091J0H2	Tyrosine-protein phosphatase; Belongs to the protein-tyrosine phosphatase family. Non- receptor class subfamily.	FERM domain-containing protein 4B.	0.400
N300_03293	N300_01267	A0A091HQ06	A0A091J6S3	Band 4.1-like 1.	Radixin.	0.580
N300_03293	N300_03610	A0A091HQ06	A0A091I572	Band 4.1-like 1.	Band 4.1-like 5.	0.491
N300_03293	N300_05323	A0A091HQ06	A0A091ICF8	Band 4.1-like 1.	Band 4.1-like 3.	0.682
N300_03293	N300_08311	A0A091HQ06	A0A091IJR0	Band 4.1-like 1.	Band 4.1-like 4A.	0.486
N300_03293	N300_09625	A0A091HQ06	A0A091I6Y8	Band 4.1-like 1.	Ezrin.	0.593
N300_03293	N300_09882	A0A091HQ06	A0A091IE58	Band 4.1-like 1.	Moesin.	0.580
N300_03293	N300_10831	A0A091HQ06	A0A091I2T3	Band 4.1-like 1.	Protein 4.1.	0.612
N300_03293	N300_11698	A0A091HQ06	A0A091HK01	Band 4.1-like 1.	Band 4.1-like 2.	0.721
N300_03610	N300_03293	A0A091I572	A0A091HQ06	Band 4.1-like 5.	Band 4.1-like 1.	0.491
N300_03610	N300_05323	A0A091I572	A0A091ICF8	Band 4.1-like 5.	Band 4.1-like 3.	0.491
N300_03610	N300_05549	A0A091I572	A0A091IIR2	Band 4.1-like 5.	FERM domain-containing protein 5.	0.439
N300_03610	N300_09232	A0A091I572	A0A091HP09	Band 4.1-like 5.	FERM domain-containing protein 3.	0.439
N300_03610	N300_10831	A0A091I572	A0A091I2T3	Band 4.1-like 5.	Protein 4.1.	0.559