(12 nodes) Low-density lipoprotein-receptor YWTD domain network (Calypte anna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_09681	Sortilin-related receptor. (2109 aa)
	N300_04577	Low-density lipoprotein receptor-related protein 2. (4627 aa)
	N300_03028	Low-density lipoprotein receptor-related protein 1B. (137 aa)
	N300_14945	Low-density lipoprotein receptor-related protein 2. (665 aa)
	N300_03029	Low-density lipoprotein receptor-related protein 1B. (179 aa)
	N300_06297	Low-density lipoprotein receptor-related protein 5. (1540 aa)
	N300_09592	Tyrosine-protein kinase receptor. (2268 aa)
	N300_05150	Pro-epidermal growth factor; EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6. (1181 aa)
	N300_04356	Very low-density lipoprotein receptor. (827 aa)
	N300_02629	Low-density lipoprotein receptor-related protein 6. (1594 aa)
	N300_09798	Nidogen-1. (1205 aa)
	N300_12235	Nidogen-2. (1100 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
N300_02629	N300_06297	A0A091IKC9	A0A091I575	Low-density lipoprotein receptor-related protein 6.	Low-density lipoprotein receptor-related protein 5.	0.946
N300_03028	N300_03029	A0A091HZ61	A0A091I1E8	Low-density lipoprotein receptor-related protein 1B.	Low-density lipoprotein receptor-related protein 1B.	0.936
N300_03028	N300_04356	A0A091HZ61	A0A091II34	Low-density lipoprotein receptor-related protein 1B.	Very low-density lipoprotein receptor.	0.900
N300_03029	N300_03028	A0A091I1E8	A0A091HZ61	Low-density lipoprotein receptor-related protein 1B.	Low-density lipoprotein receptor-related protein 1B.	0.936
N300_03029	N300_04356	A0A091I1E8	A0A091II34	Low-density lipoprotein receptor-related protein 1B.	Very low-density lipoprotein receptor.	0.927
N300_03029	N300_04577	A0A091I1E8	A0A091HLC5	Low-density lipoprotein receptor-related protein 1B.	Low-density lipoprotein receptor-related protein 2.	0.755
N300_03029	N300_05150	A0A091I1E8	A0A091I9H8	Low-density lipoprotein receptor-related protein 1B.	Pro-epidermal growth factor; EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.	0.431
N300_03029	N300_09592	A0A091I1E8	A0A091I5X1	Low-density lipoprotein receptor-related protein 1B.	Tyrosine-protein kinase receptor.	0.401
N300_03029	N300_14945	A0A091I1E8	A0A091I094	Low-density lipoprotein receptor-related protein 1B.	Low-density lipoprotein receptor-related protein 2.	0.974
N300_04356	N300_03028	A0A091II34	A0A091HZ61	Very low-density lipoprotein receptor.	Low-density lipoprotein receptor-related protein 1B.	0.900
N300_04356	N300_03029	A0A091II34	A0A091I1E8	Very low-density lipoprotein receptor.	Low-density lipoprotein receptor-related protein 1B.	0.927
N300_04356	N300_05150	A0A091II34	A0A091I9H8	Very low-density lipoprotein receptor.	Pro-epidermal growth factor; EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.	0.420
N300_04577	N300_03029	A0A091HLC5	A0A091I1E8	Low-density lipoprotein receptor-related protein 2.	Low-density lipoprotein receptor-related protein 1B.	0.755
N300_04577	N300_05150	A0A091HLC5	A0A091I9H8	Low-density lipoprotein receptor-related protein 2.	Pro-epidermal growth factor; EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.	0.552
N300_05150	N300_03029	A0A091I9H8	A0A091I1E8	Pro-epidermal growth factor; EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.	Low-density lipoprotein receptor-related protein 1B.	0.431
N300_05150	N300_04356	A0A091I9H8	A0A091II34	Pro-epidermal growth factor; EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.	Very low-density lipoprotein receptor.	0.420
N300_05150	N300_04577	A0A091I9H8	A0A091HLC5	Pro-epidermal growth factor; EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.	Low-density lipoprotein receptor-related protein 2.	0.552
N300_05150	N300_09592	A0A091I9H8	A0A091I5X1	Pro-epidermal growth factor; EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.	Tyrosine-protein kinase receptor.	0.405
N300_05150	N300_14945	A0A091I9H8	A0A091I094	Pro-epidermal growth factor; EGF stimulates the growth of various epidermal and epithelial tissues in vivo and in vitro and of some fibroblasts in cell culture. Magnesiotropic hormone that stimulates magnesium reabsorption in the renal distal convoluted tubule via engagement of EGFR and activation of the magnesium channel TRPM6.	Low-density lipoprotein receptor-related protein 2.	0.552
N300_06297	N300_02629	A0A091I575	A0A091IKC9	Low-density lipoprotein receptor-related protein 5.	Low-density lipoprotein receptor-related protein 6.	0.946