(104 nodes) RNA degradation network (Calypte anna)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	N300_06623	CCR4-NOT transcription complex subunit 4. (762 aa)
	N300_12104	DIS3-like exonuclease 1; Belongs to the RNR ribonuclease family. (1005 aa)
	N300_14620	Putative ATP-dependent RNA helicase DHX30. (1152 aa)
	N300_10609	CCR4-NOT transcription complex subunit 6. (557 aa)
	N300_05673	Protein FAM161B. (462 aa)
	N300_10900	Vacuolar protein sorting-associated protein 72. (290 aa)
	N300_14812	Protein BTG1. (121 aa)
	N300_13181	Protein Tob2. (340 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
	N300_07870	Peptidyl-glycine alpha-amidating monooxygenase. (974 aa)
	N300_03988	Protein PAT1 2. (606 aa)
	N300_10966	Cellular nucleic acid-binding protein. (170 aa)
	N300_03985	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (170 aa)
	N300_05194	Exosome complex component RRP43. (283 aa)
	N300_14060	Nucleoside diphosphate-linked moiety X motif 6; Belongs to the Nudix hydrolase family. (201 aa)
	N300_13614	6-phosphofructokinase type C. (786 aa)
	N300_02267	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (174 aa)
	N300_15919	Uncharacterized protein; Belongs to the heat shock protein 70 family. (521 aa)
	N300_04366	COBW domain-containing protein 1. (333 aa)
	N300_13364	DIS3-like exonuclease 2. (126 aa)
	N300_04312	Zinc transporter 5. (761 aa)
	N300_04381	WD repeat-containing protein 61. (256 aa)
	N300_08307	M7GpppN-mRNA hydrolase. (415 aa)
	N300_06956	Zinc transporter 6. (460 aa)
	N300_06727	Uncharacterized protein; Belongs to the chaperonin (HSP60) family. (573 aa)
	N300_02416	T-complex protein 1 subunit gamma; Belongs to the TCP-1 chaperonin family. (241 aa)
	N300_07163	M7GpppX diphosphatase. (269 aa)
	N300_03738	Protein BTG2. (134 aa)
	N300_02157	Zinc finger CCHC domain-containing protein 7. (208 aa)
	N300_13258	Transmembrane protein 87A. (528 aa)
	N300_12676	Peptidase A2 domain-containing protein. (157 aa)
	N300_06355	T-complex protein 1 subunit delta; Belongs to the TCP-1 chaperonin family. (536 aa)
	N300_14617	6-phosphofructokinase, muscle type. (140 aa)
	N300_14070	Exosome complex component RRP45. (410 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (67 aa)
	N300_05928	WD repeat-containing protein WRAP73. (431 aa)
	N300_07611	CCR4-NOT transcription complex subunit 10. (738 aa)
	N300_14979	Peptidase A2 domain-containing protein. (159 aa)
	N300_14329	Maternal B9.10 protein. (229 aa)
	N300_09455	PAB-dependent poly(A)-specific ribonuclease subunit 3. (741 aa)
	N300_04881	Protein Tob1. (329 aa)
	N300_13363	DIS3-like exonuclease 2. (216 aa)
	N300_14646	NAD(P)H-hydrate epimerase. (187 aa)
	N300_01508	Exosome complex component RRP42. (291 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (88 aa)
	N300_10189	5'-3' exoribonuclease 2. (931 aa)
	N300_10556	CCR4-NOT transcription complex subunit 8. (292 aa)
	N300_07702	KIF1-binding protein. (478 aa)
	N300_00714	PAB-dependent poly(A)-specific ribonuclease subunit 2. (1045 aa)
	N300_01963	Exonuclease 3'-5' domain-containing protein 2. (617 aa)
	N300_14131	Gamma-enolase. (433 aa)
	N300_10048	2',5'-phosphodiesterase 12. (582 aa)
	N300_02093	CCR4-NOT transcription complex subunit 6-like. (554 aa)
	N300_09934	Protein BTG1. (117 aa)
	N300_03575	Cell differentiation protein RCD1. (296 aa)
	N300_15660	Helicase with zinc finger domain 2. (2603 aa)
	N300_13940	Importin-8. (1019 aa)
	N300_04246	Exosome complex component RRP40. (168 aa)
	N300_13919	mRNA-decapping enzyme 1B. (555 aa)
	N300_08754	Nuclear nucleic acid-binding protein C1D. (141 aa)
	N300_01424	Exosome component 10. (852 aa)
	N300_06428	Plexin domain-containing protein 2. (502 aa)
	N300_12637	Zinc finger CCHC domain-containing protein 2. (965 aa)
	N300_08742	U6 snRNA-associated Sm-like LSm7. (101 aa)
	N300_02825	DUF4209 domain-containing protein. (669 aa)
	N300_07204	Serine/threonine-protein phosphatase 4 regulatory subunit 2. (392 aa)
	N300_02158	Zinc finger CCHC domain-containing protein 7. (199 aa)
	N300_14349	Enhancer of mRNA-decapping protein 3. (510 aa)
	N300_10030	mRNA-decapping enzyme 1A. (531 aa)
	N300_05501	ATP-dependent RNA helicase DHX29. (1304 aa)
	N300_14740	CCR4-NOT transcription complex subunit 2. (524 aa)
	N300_06103	Plexin domain-containing protein 1. (386 aa)
	N300_03056	U6 snRNA-associated Sm-like LSm6. (80 aa)
	N300_01403	Putative ATP-dependent RNA helicase DDX6. (483 aa)
	N300_05502	Superkiller viralicidic activity 2-like 2. (995 aa)
	N300_04593	Enolase-like ENO4. (508 aa)
	N300_10122	T-complex protein 1 subunit alpha. (558 aa)
	N300_12585	dUTPase domain-containing protein. (155 aa)
	N300_03130	U6 snRNA-associated Sm-like LSm1. (95 aa)
	N300_11857	Putative ATP-dependent RNA helicase DHX36. (913 aa)
	N300_06368	McKusick-Kaufman/Bardet-Biedl syndromes putative chaperonin. (572 aa)
	N300_06354	Protein FAM161A. (600 aa)
	N300_14735	T-complex protein 1 subunit beta; Belongs to the TCP-1 chaperonin family. (534 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (121 aa)
	N300_00925	Peptidase A2 domain-containing protein. (160 aa)
	N300_05596	Bardet-Biedl syndrome 10 protein. (487 aa)
	N300_08391	Exosome complex component RRP46. (192 aa)
	N300_02804	T-complex protein 1 subunit epsilon; Belongs to the TCP-1 chaperonin family. (506 aa)
	N300_03861	PAP-associated domain-containing protein 5. (501 aa)
	N300_03893	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (572 aa)
	N300_04150	CCR4-NOT transcription complex subunit 7. (285 aa)
	N300_01927	5'-3' exoribonuclease 1. (1711 aa)
	N300_04172	Ufm1-specific protease 2. (460 aa)
	N300_03426	M-phase phosphoprotein 6. (148 aa)
	N300_13735	Zinc finger CCHC domain-containing protein 9. (235 aa)
	N300_14882	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (72 aa)
	N300_01900	6-phosphofructokinase, liver type. (741 aa)
	N300_12516	Exosome complex component CSL4. (147 aa)
	N300_08918	Poly(A)-specific ribonuclease PARN. (618 aa)
	N300_00792	2-(3-amino-3-carboxypropyl)histidine synthase subunit 2; Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2. (481 aa)
	N300_05232	Nocturnin. (369 aa)
	N300_14580	T-complex protein 1 subunit zeta. (390 aa)
	N300_10124	Poly(A)-specific ribonuclease PARN-like domain-containing protein 1. (503 aa)
	N300_05374	Putative ATP-dependent RNA helicase DHX57. (148 aa)

Your Current Organism:

Calypte anna

NCBI taxonomy Id: 9244
Other names: C. anna

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM3	LSM4	A0A091HJE7	A0A091IG16	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM3	LSM5	A0A091HJE7	A0A091J8X2	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	LSM8	A0A091HJE7	A0A091HYG9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	N300_01403	A0A091HJE7	A0A091IDS5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative ATP-dependent RNA helicase DDX6.	0.882
LSM3	N300_01927	A0A091HJE7	A0A091HUE0	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	5'-3' exoribonuclease 1.	0.978
LSM3	N300_03056	A0A091HJE7	A0A091IDD6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like LSm6.	0.999
LSM3	N300_03130	A0A091HJE7	A0A091IEM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like LSm1.	0.998
LSM3	N300_03988	A0A091HJE7	A0A091HHD6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Protein PAT1 2.	0.998
LSM3	N300_07702	A0A091HJE7	A0A091I958	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	KIF1-binding protein.	0.840
LSM3	N300_08307	A0A091HJE7	A0A091ILZ5	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	M7GpppN-mRNA hydrolase.	0.917
LSM3	N300_08391	A0A091HJE7	A0A091IGQ6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Exosome complex component RRP46.	0.403
LSM3	N300_08742	A0A091HJE7	A0A091HWI9	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like LSm7.	0.998
LSM3	N300_10030	A0A091HJE7	A0A091IBT8	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA-decapping enzyme 1A.	0.750
LSM3	N300_13919	A0A091HJE7	A0A091I4F6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	mRNA-decapping enzyme 1B.	0.750
LSM3	N300_14349	A0A091HJE7	A0A091IB14	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Enhancer of mRNA-decapping protein 3.	0.870
LSM3	N300_14646	A0A091HJE7	A0A091HZ83	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	NAD(P)H-hydrate epimerase.	0.790
LSM4	LSM3	A0A091IG16	A0A091HJE7	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM4	LSM5	A0A091IG16	A0A091J8X2	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.998
LSM4	LSM8	A0A091IG16	A0A091HYG9	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.998
LSM4	N300_01403	A0A091IG16	A0A091IDS5	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Putative ATP-dependent RNA helicase DDX6.	0.951