16 items (Ornithorhynchus anatinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	NOP56	NOP56 ribonucleoprotein. (536 aa)
	UTP4	WD_REPEATS_REGION domain-containing protein. (686 aa)
	NOP58	NOP58 ribonucleoprotein. (413 aa)
	RRP9	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (471 aa)
	WDR3	WD repeat domain 3. (937 aa)
	F6YWL4_ORNAN	Uncharacterized protein. (593 aa)
	UTP6	UTP6 small subunit processome component. (593 aa)
	UTP15	UTP15 small subunit processome component. (454 aa)
	TBL3	Transducin beta like 3. (787 aa)
	SNU13	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (127 aa)
	WDR43	WD repeat domain 43. (590 aa)
	IMP4	IMP U3 small nucleolar ribonucleoprotein 4. (296 aa)
	FBLL1	Uncharacterized protein. (256 aa)
	RRP7A	Ribosomal RNA processing 7 homolog A. (272 aa)
	WDR36	WD repeat domain 36. (896 aa)
	PWP2	Uncharacterized protein. (919 aa)

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6YWL4_ORNAN	FBLL1	ENSOANP00000005064	ENSOANP00000023095	Uncharacterized protein.	Uncharacterized protein.	0.992
F6YWL4_ORNAN	IMP4	ENSOANP00000005064	ENSOANP00000022996	Uncharacterized protein.	IMP U3 small nucleolar ribonucleoprotein 4.	0.996
F6YWL4_ORNAN	NOP56	ENSOANP00000005064	ENSOANP00000000804	Uncharacterized protein.	NOP56 ribonucleoprotein.	0.996
F6YWL4_ORNAN	NOP58	ENSOANP00000005064	ENSOANP00000003836	Uncharacterized protein.	NOP58 ribonucleoprotein.	0.997
F6YWL4_ORNAN	PWP2	ENSOANP00000005064	ENSOANP00000027645	Uncharacterized protein.	Uncharacterized protein.	0.999
F6YWL4_ORNAN	RRP7A	ENSOANP00000005064	ENSOANP00000023624	Uncharacterized protein.	Ribosomal RNA processing 7 homolog A.	0.998
F6YWL4_ORNAN	RRP9	ENSOANP00000005064	ENSOANP00000004012	Uncharacterized protein.	Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein.	0.994
F6YWL4_ORNAN	SNU13	ENSOANP00000005064	ENSOANP00000017949	Uncharacterized protein.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.993
F6YWL4_ORNAN	TBL3	ENSOANP00000005064	ENSOANP00000015573	Uncharacterized protein.	Transducin beta like 3.	0.999
F6YWL4_ORNAN	UTP15	ENSOANP00000005064	ENSOANP00000013849	Uncharacterized protein.	UTP15 small subunit processome component.	0.999
F6YWL4_ORNAN	UTP4	ENSOANP00000005064	ENSOANP00000003740	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.995
F6YWL4_ORNAN	UTP6	ENSOANP00000005064	ENSOANP00000006797	Uncharacterized protein.	UTP6 small subunit processome component.	0.999
F6YWL4_ORNAN	WDR3	ENSOANP00000005064	ENSOANP00000004860	Uncharacterized protein.	WD repeat domain 3.	0.999
F6YWL4_ORNAN	WDR36	ENSOANP00000005064	ENSOANP00000023867	Uncharacterized protein.	WD repeat domain 36.	0.999
F6YWL4_ORNAN	WDR43	ENSOANP00000005064	ENSOANP00000022797	Uncharacterized protein.	WD repeat domain 43.	0.999
FBLL1	F6YWL4_ORNAN	ENSOANP00000023095	ENSOANP00000005064	Uncharacterized protein.	Uncharacterized protein.	0.992
FBLL1	IMP4	ENSOANP00000023095	ENSOANP00000022996	Uncharacterized protein.	IMP U3 small nucleolar ribonucleoprotein 4.	0.986
FBLL1	NOP56	ENSOANP00000023095	ENSOANP00000000804	Uncharacterized protein.	NOP56 ribonucleoprotein.	0.999
FBLL1	NOP58	ENSOANP00000023095	ENSOANP00000003836	Uncharacterized protein.	NOP58 ribonucleoprotein.	0.999
FBLL1	PWP2	ENSOANP00000023095	ENSOANP00000027645	Uncharacterized protein.	Uncharacterized protein.	0.995