(5 nodes) Double-strand/single-strand DNA junction binding, and BRCA1-B complex network (Ornithorhynchus anatinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RBBP8	Uncharacterized protein. (569 aa)
	K7EAF2_ORNAN	SAE2 domain-containing protein. (183 aa)
	BRCA1	Uncharacterized protein. (208 aa)
	K7ED80_ORNAN	CtIP_N domain-containing protein. (108 aa)
	BARD1	Uncharacterized protein. (205 aa)

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BARD1	BRCA1	ENSOANP00000032797	ENSOANP00000031186	Uncharacterized protein.	Uncharacterized protein.	0.988
BARD1	K7EAF2_ORNAN	ENSOANP00000032797	ENSOANP00000030509	Uncharacterized protein.	SAE2 domain-containing protein.	0.747
BARD1	K7ED80_ORNAN	ENSOANP00000032797	ENSOANP00000031487	Uncharacterized protein.	CtIP_N domain-containing protein.	0.747
BARD1	RBBP8	ENSOANP00000032797	ENSOANP00000014622	Uncharacterized protein.	Uncharacterized protein.	0.926
BRCA1	BARD1	ENSOANP00000031186	ENSOANP00000032797	Uncharacterized protein.	Uncharacterized protein.	0.988
BRCA1	K7EAF2_ORNAN	ENSOANP00000031186	ENSOANP00000030509	Uncharacterized protein.	SAE2 domain-containing protein.	0.823
BRCA1	K7ED80_ORNAN	ENSOANP00000031186	ENSOANP00000031487	Uncharacterized protein.	CtIP_N domain-containing protein.	0.823
BRCA1	RBBP8	ENSOANP00000031186	ENSOANP00000014622	Uncharacterized protein.	Uncharacterized protein.	0.995
K7EAF2_ORNAN	BARD1	ENSOANP00000030509	ENSOANP00000032797	SAE2 domain-containing protein.	Uncharacterized protein.	0.747
K7EAF2_ORNAN	BRCA1	ENSOANP00000030509	ENSOANP00000031186	SAE2 domain-containing protein.	Uncharacterized protein.	0.823
K7EAF2_ORNAN	K7ED80_ORNAN	ENSOANP00000030509	ENSOANP00000031487	SAE2 domain-containing protein.	CtIP_N domain-containing protein.	0.900
K7EAF2_ORNAN	RBBP8	ENSOANP00000030509	ENSOANP00000014622	SAE2 domain-containing protein.	Uncharacterized protein.	0.900
K7ED80_ORNAN	BARD1	ENSOANP00000031487	ENSOANP00000032797	CtIP_N domain-containing protein.	Uncharacterized protein.	0.747
K7ED80_ORNAN	BRCA1	ENSOANP00000031487	ENSOANP00000031186	CtIP_N domain-containing protein.	Uncharacterized protein.	0.823
K7ED80_ORNAN	K7EAF2_ORNAN	ENSOANP00000031487	ENSOANP00000030509	CtIP_N domain-containing protein.	SAE2 domain-containing protein.	0.900
K7ED80_ORNAN	RBBP8	ENSOANP00000031487	ENSOANP00000014622	CtIP_N domain-containing protein.	Uncharacterized protein.	0.900
RBBP8	BARD1	ENSOANP00000014622	ENSOANP00000032797	Uncharacterized protein.	Uncharacterized protein.	0.926
RBBP8	BRCA1	ENSOANP00000014622	ENSOANP00000031186	Uncharacterized protein.	Uncharacterized protein.	0.995
RBBP8	K7EAF2_ORNAN	ENSOANP00000014622	ENSOANP00000030509	Uncharacterized protein.	SAE2 domain-containing protein.	0.900
RBBP8	K7ED80_ORNAN	ENSOANP00000014622	ENSOANP00000031487	Uncharacterized protein.	CtIP_N domain-containing protein.	0.900