(17 nodes) Platelet formation network (Ornithorhynchus anatinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PTPN6	Protein tyrosine phosphatase non-receptor type 6. (420 aa)
	K7EGW4_ORNAN	RING-type domain-containing protein. (298 aa)
	ENSOANP00000032447	annotation not available (95 aa)
	K7EF03_ORNAN	KIX domain-containing protein. (143 aa)
	K7EE38_ORNAN	WD_REPEATS_REGION domain-containing protein. (155 aa)
	K7EBQ2_ORNAN	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (131 aa)
	K7EAM8_ORNAN	TAZ-type domain-containing protein. (96 aa)
	EP300	E1A binding protein p300. (2421 aa)
	WDR1	WD repeat domain 1. (334 aa)
	F7AVI5_ORNAN	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily. (599 aa)
	MEF2C	Myocyte enhancer factor 2C. (479 aa)
	GATA1	GATA-type domain-containing protein. (223 aa)
	F6SWI6_ORNAN	C-type lectin domain-containing protein. (233 aa)
	VPS33A	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (577 aa)
	PTPN11	Uncharacterized protein. (368 aa)
	F6Y2F7_ORNAN	Uncharacterized protein. (754 aa)
	F6W8B0_ORNAN	Uncharacterized protein. (211 aa)

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSOANP00000032447	GATA1	ENSOANP00000032447	ENSOANP00000017064	annotation not available	GATA-type domain-containing protein.	0.552
ENSOANP00000032447	K7EF03_ORNAN	ENSOANP00000032447	ENSOANP00000032110	annotation not available	KIX domain-containing protein.	0.470
ENSOANP00000032447	MEF2C	ENSOANP00000032447	ENSOANP00000017547	annotation not available	Myocyte enhancer factor 2C.	0.440
EP300	GATA1	ENSOANP00000027533	ENSOANP00000017064	E1A binding protein p300.	GATA-type domain-containing protein.	0.552
EP300	MEF2C	ENSOANP00000027533	ENSOANP00000017547	E1A binding protein p300.	Myocyte enhancer factor 2C.	0.440
F6SWI6_ORNAN	PTPN6	ENSOANP00000015164	ENSOANP00000020208	C-type lectin domain-containing protein.	Protein tyrosine phosphatase non-receptor type 6.	0.435
F6W8B0_ORNAN	PTPN11	ENSOANP00000000252	ENSOANP00000009592	Uncharacterized protein.	Uncharacterized protein.	0.900
F6W8B0_ORNAN	PTPN6	ENSOANP00000000252	ENSOANP00000020208	Uncharacterized protein.	Protein tyrosine phosphatase non-receptor type 6.	0.436
F6Y2F7_ORNAN	GATA1	ENSOANP00000005093	ENSOANP00000017064	Uncharacterized protein.	GATA-type domain-containing protein.	0.941
F7AVI5_ORNAN	PTPN6	ENSOANP00000018314	ENSOANP00000020208	Tyrosine-protein phosphatase non-receptor type; Belongs to the protein-tyrosine phosphatase family. Non- receptor class 2 subfamily.	Protein tyrosine phosphatase non-receptor type 6.	0.450
GATA1	ENSOANP00000032447	ENSOANP00000017064	ENSOANP00000032447	GATA-type domain-containing protein.	annotation not available	0.552
GATA1	EP300	ENSOANP00000017064	ENSOANP00000027533	GATA-type domain-containing protein.	E1A binding protein p300.	0.552
GATA1	F6Y2F7_ORNAN	ENSOANP00000017064	ENSOANP00000005093	GATA-type domain-containing protein.	Uncharacterized protein.	0.941
GATA1	K7EAM8_ORNAN	ENSOANP00000017064	ENSOANP00000030585	GATA-type domain-containing protein.	TAZ-type domain-containing protein.	0.552
GATA1	K7EF03_ORNAN	ENSOANP00000017064	ENSOANP00000032110	GATA-type domain-containing protein.	KIX domain-containing protein.	0.552
GATA1	K7EGW4_ORNAN	ENSOANP00000017064	ENSOANP00000032771	GATA-type domain-containing protein.	RING-type domain-containing protein.	0.552
K7EAM8_ORNAN	GATA1	ENSOANP00000030585	ENSOANP00000017064	TAZ-type domain-containing protein.	GATA-type domain-containing protein.	0.552
K7EAM8_ORNAN	K7EF03_ORNAN	ENSOANP00000030585	ENSOANP00000032110	TAZ-type domain-containing protein.	KIX domain-containing protein.	0.477
K7EAM8_ORNAN	MEF2C	ENSOANP00000030585	ENSOANP00000017547	TAZ-type domain-containing protein.	Myocyte enhancer factor 2C.	0.440
K7EE38_ORNAN	WDR1	ENSOANP00000031795	ENSOANP00000019109	WD_REPEATS_REGION domain-containing protein.	WD repeat domain 1.	0.900