(10 nodes) CRD-mediated mRNA stabilization network (Ornithorhynchus anatinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	HNRNPU	Heterogeneous nuclear ribonucleoprotein U. (585 aa)
	SYNCRIP	Synaptotagmin binding cytoplasmic RNA interacting protein. (623 aa)
	IGF2BP2	Insulin like growth factor 2 mRNA binding protein 2. (497 aa)
	CSDE1	Cold shock domain containing E1. (787 aa)
	DHX9	Uncharacterized protein. (1273 aa)
	K7E7E6_ORNAN	Uncharacterized protein. (72 aa)
	K7E6F9_ORNAN	Uncharacterized protein. (156 aa)
	F7B724_ORNAN	RRM domain-containing protein. (362 aa)
	IGF2BP3	Insulin like growth factor 2 mRNA binding protein 3. (586 aa)
	YBX1	Y-box binding protein 1. (298 aa)

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSDE1	SYNCRIP	ENSOANP00000005313	ENSOANP00000016010	Cold shock domain containing E1.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.508
DHX9	HNRNPU	ENSOANP00000001567	ENSOANP00000016264	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.679
DHX9	SYNCRIP	ENSOANP00000001567	ENSOANP00000016010	Uncharacterized protein.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.570
DHX9	YBX1	ENSOANP00000001567	ENSOANP00000018589	Uncharacterized protein.	Y-box binding protein 1.	0.504
F7B724_ORNAN	HNRNPU	ENSOANP00000023395	ENSOANP00000016264	RRM domain-containing protein.	Heterogeneous nuclear ribonucleoprotein U.	0.558
F7B724_ORNAN	SYNCRIP	ENSOANP00000023395	ENSOANP00000016010	RRM domain-containing protein.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.544
F7B724_ORNAN	YBX1	ENSOANP00000023395	ENSOANP00000018589	RRM domain-containing protein.	Y-box binding protein 1.	0.408
HNRNPU	DHX9	ENSOANP00000016264	ENSOANP00000001567	Heterogeneous nuclear ribonucleoprotein U.	Uncharacterized protein.	0.679
HNRNPU	F7B724_ORNAN	ENSOANP00000016264	ENSOANP00000023395	Heterogeneous nuclear ribonucleoprotein U.	RRM domain-containing protein.	0.558
HNRNPU	K7E6F9_ORNAN	ENSOANP00000016264	ENSOANP00000029116	Heterogeneous nuclear ribonucleoprotein U.	Uncharacterized protein.	0.679
HNRNPU	SYNCRIP	ENSOANP00000016264	ENSOANP00000016010	Heterogeneous nuclear ribonucleoprotein U.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.930
HNRNPU	YBX1	ENSOANP00000016264	ENSOANP00000018589	Heterogeneous nuclear ribonucleoprotein U.	Y-box binding protein 1.	0.799
IGF2BP3	YBX1	ENSOANP00000022392	ENSOANP00000018589	Insulin like growth factor 2 mRNA binding protein 3.	Y-box binding protein 1.	0.408
K7E6F9_ORNAN	HNRNPU	ENSOANP00000029116	ENSOANP00000016264	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.679
K7E6F9_ORNAN	SYNCRIP	ENSOANP00000029116	ENSOANP00000016010	Uncharacterized protein.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.570
K7E6F9_ORNAN	YBX1	ENSOANP00000029116	ENSOANP00000018589	Uncharacterized protein.	Y-box binding protein 1.	0.504
SYNCRIP	CSDE1	ENSOANP00000016010	ENSOANP00000005313	Synaptotagmin binding cytoplasmic RNA interacting protein.	Cold shock domain containing E1.	0.508
SYNCRIP	DHX9	ENSOANP00000016010	ENSOANP00000001567	Synaptotagmin binding cytoplasmic RNA interacting protein.	Uncharacterized protein.	0.570
SYNCRIP	F7B724_ORNAN	ENSOANP00000016010	ENSOANP00000023395	Synaptotagmin binding cytoplasmic RNA interacting protein.	RRM domain-containing protein.	0.544
SYNCRIP	HNRNPU	ENSOANP00000016010	ENSOANP00000016264	Synaptotagmin binding cytoplasmic RNA interacting protein.	Heterogeneous nuclear ribonucleoprotein U.	0.930