(12 nodes) dDENN domain network (Ornithorhynchus anatinus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	DENND5A	DENN domain containing 5A. (1251 aa)
	DENND2C	DENN domain containing 2C. (942 aa)
	F6XV86_ORNAN	Uncharacterized protein. (1251 aa)
	SBF2	UDENN domain-containing protein. (362 aa)
	ST5	UDENN domain-containing protein. (626 aa)
	DENND3	DENN domain containing 3. (1253 aa)
	MADD	UDENN domain-containing protein. (1233 aa)
	DENND4A	Uncharacterized protein. (664 aa)
	DENND2D	DENN domain containing 2D. (526 aa)
	F7GCU1_ORNAN	Uncharacterized protein. (754 aa)
	DENND1B	DENN domain containing 1B. (654 aa)
	F6VYM4_ORNAN	UDENN domain-containing protein. (518 aa)

Your Current Organism:

Ornithorhynchus anatinus

NCBI taxonomy Id: 9258
Other names: O. anatinus, Platypus anatinus, duck-billed platypus, duckbill platypus, platypus

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DENND1B	F6VYM4_ORNAN	ENSOANP00000004333	ENSOANP00000004908	DENN domain containing 1B.	UDENN domain-containing protein.	0.533
DENND4A	F7GCU1_ORNAN	ENSOANP00000015474	ENSOANP00000002669	Uncharacterized protein.	Uncharacterized protein.	0.922
F6VYM4_ORNAN	DENND1B	ENSOANP00000004908	ENSOANP00000004333	UDENN domain-containing protein.	DENN domain containing 1B.	0.533
F6XV86_ORNAN	SBF2	ENSOANP00000009324	ENSOANP00000009325	Uncharacterized protein.	UDENN domain-containing protein.	0.922
F7GCU1_ORNAN	DENND4A	ENSOANP00000002669	ENSOANP00000015474	Uncharacterized protein.	Uncharacterized protein.	0.922
SBF2	F6XV86_ORNAN	ENSOANP00000009325	ENSOANP00000009324	UDENN domain-containing protein.	Uncharacterized protein.	0.922