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| | AGA80543.1 | PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein. (346 aa) |
| | AGA77503.1 | PFAM: TfoX N-terminal domain. (128 aa) |
| | AGA77452.1 | PFAM: Phosphoribulokinase / Uridine kinase family; Belongs to the uridine kinase family. (210 aa) |
| | AGA77440.1 | Beta-propeller domain-containing protein, methanol dehydrogenase; PFAM: Domain of unknown function (DUF477). (275 aa) |
| | AGA77438.1 | PFAM: Ethanolamine ammonia lyase large subunit (EutB); Ethanolamine ammonia-lyase light chain (EutC). (774 aa) |
| | recF | recF protein; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (368 aa) |
| | AGA77419.1 | PFAM: Tetratricopeptide repeat. (468 aa) |
| | AGA77265.1 | Exopolyphosphatase-like enzyme; PFAM: DHH family; DHHA1 domain. (346 aa) |
| | AGA77167.1 | PFAM: Protein of unknown function (DUF3127). (117 aa) |
| | AGA77129.1 | Hypothetical protein. (434 aa) |
| | AGA77101.1 | PFAM: Sigma 54 modulation protein / S30EA ribosomal protein; TIGRFAM: ribosomal subunit interface protein. (101 aa) |
| | rpsU | PFAM: Ribosomal protein S21; TIGRFAM: ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. (64 aa) |
| | AGA77059.1 | ATP-dependent DNA helicase RecQ; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family. (708 aa) |
| | AGA76994.1 | DnaK suppressor protein; PFAM: Prokaryotic dksA/traR C4-type zinc finger. (127 aa) |
| | AGA76895.1 | Hypothetical protein. (876 aa) |
| | rpmB | PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (80 aa) |
| | rpmG | PFAM: Ribosomal protein L33; TIGRFAM: ribosomal protein L33, bacterial type; Belongs to the bacterial ribosomal protein bL33 family. (60 aa) |
| | AGA76741.1 | Hypothetical protein. (1000 aa) |
| | AGA76730.1 | DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain. (1137 aa) |
| | AGA76726.1 | DNA repair protein; PFAM: Protein of unknown function (DUF2466). (156 aa) |
| | AGA76723.1 | DNA primase; PFAM: CHC2 zinc finger. (287 aa) |
| | AGA76705.1 | PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region. (526 aa) |
| | AGA76683.1 | DNA repair protein; PFAM: Protein of unknown function (DUF2466). (156 aa) |
| | AGA76656.1 | Hypothetical protein. (314 aa) |
| | AGA76634.1 | enoyl-CoA hydratase/carnithine racemase; PFAM: Enoyl-CoA hydratase/isomerase family; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa) |
| | AGA76633.1 | ATP-dependent DNA helicase, RecQ family; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family. (640 aa) |
| | AGA76573.1 | Hypothetical protein; PFAM: ASPIC and UnbV. (1111 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (178 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (125 aa) |
| | rpsG | Ribosomal protein S7, bacterial/organelle; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (155 aa) |
| | rpsJ | Ribosomal protein S10, bacterial/organelle; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (101 aa) |
| | rplC | 50S ribosomal protein L3, bacterial; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (210 aa) |
| | rplW | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (95 aa) |
| | rplB | Ribosomal protein L2, bacterial/organellar; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa) |
| | rpsS | Ribosomal protein S19, bacterial/organelle; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (92 aa) |
| | rpsC | Ribosomal protein S3, bacterial type; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (242 aa) |
| | rpmC | PFAM: Ribosomal L29 protein; TIGRFAM: ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. (64 aa) |
| | rpsQ | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (86 aa) |
| | rplN | Ribosomal protein L14, bacterial/organelle; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (186 aa) |
| | rpsN | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (89 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa) |
| | rplR | Ribosomal protein L18, bacterial type; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (116 aa) |
| | rpsE | Ribosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (172 aa) |
| | rpmD | PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle. (59 aa) |
| | rplO | Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (148 aa) |
| | rpmJ | PFAM: Ribosomal protein L36; TIGRFAM: ribosomal protein L36, bacterial type; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | rpsK | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (132 aa) |
| | rplQ | PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17. (207 aa) |
| | rpmF | PFAM: Ribosomal L32p protein family; TIGRFAM: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. (63 aa) |
| | AGA76463.1 | ATP-dependent DNA helicase RecQ; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family. (725 aa) |
| | dtd | D-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (150 aa) |
| | rpsB | PFAM: Ribosomal protein S2; TIGRFAM: ribosomal protein S2, bacterial type; Belongs to the universal ribosomal protein uS2 family. (253 aa) |
| | rpsI | PFAM: Ribosomal protein S9/S16; Belongs to the universal ribosomal protein uS9 family. (128 aa) |
| | rplM | Ribosomal protein L13, bacterial type; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (147 aa) |
| | AGA76338.1 | PFAM: Domain of Unknown Function (DUF349). (430 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (84 aa) |
| | AGA76332.1 | DNA repair protein; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc. (187 aa) |
| | AGA80775.1 | PFAM: MgsA AAA+ ATPase C terminal; Holliday junction DNA helicase ruvB N-terminus. (420 aa) |
| | rplY | Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (196 aa) |
| | AGA80761.1 | PFAM: ATPase family associated with various cellular activities (AAA). (308 aa) |
| | AGA80756.1 | Hypothetical protein. (467 aa) |
| | AGA80615.1 | DNA repair protein; PFAM: Protein of unknown function (DUF2466). (156 aa) |
| | AGA80546.1 | Hypothetical protein. (232 aa) |
| | AGA80545.1 | Hypothetical protein. (215 aa) |
| | AGA77506.1 | PFAM: Nitroreductase family. (201 aa) |
| | AGA77520.1 | PFAM: Bacterial DNA-binding protein; Belongs to the bacterial histone-like protein family. (102 aa) |
| | AGA77521.1 | Hypothetical protein. (272 aa) |
| | nth | Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (227 aa) |
| | rpsP | PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. (189 aa) |
| | AGA77616.1 | DNA repair protein; PFAM: Protein of unknown function (DUF2466). (153 aa) |
| | AGA77627.1 | PFAM: TrbL/VirB6 plasmid conjugal transfer protein; Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein. (325 aa) |
| | AGA77629.1 | Hypothetical protein. (215 aa) |
| | AGA77630.1 | Hypothetical protein. (228 aa) |
| | kynU | Kynureninase; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. (426 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (228 aa) |
| | AGA77743.1 | Phytoene desaturase; PFAM: Flavin containing amine oxidoreductase; TIGRFAM: phytoene desaturase. (498 aa) |
| | AGA77782.1 | Hypothetical protein. (482 aa) |
| | AGA77807.1 | DNA/RNA helicase, superfamily II, SNF2 family; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain. (979 aa) |
| | AGA77822.1 | PFAM: ATPase family associated with various cellular activities (AAA). (323 aa) |
| | AGA77855.1 | Na+/phosphate symporter; PFAM: Na+/Pi-cotransporter. (399 aa) |
| | AGA77957.1 | Ribulose 1,5-bisphosphate carboxylase, large subunit; PFAM: Ribulose bisphosphate carboxylase large chain, catalytic domain; Belongs to the RuBisCO large chain family. (414 aa) |
| | rpmE2 | PFAM: Ribosomal protein L31; TIGRFAM: ribosomal protein L31. (81 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | rpmH | PFAM: Ribosomal protein L34; TIGRFAM: ribosomal protein L34, bacterial type; manually curated; Belongs to the bacterial ribosomal protein bL34 family. (52 aa) |
| | AGA78145.1 | Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family. (395 aa) |
| | AGA78184.1 | DNA repair protein; PFAM: Protein of unknown function (DUF2466). (153 aa) |
| | AGA78197.1 | PFAM: TrbL/VirB6 plasmid conjugal transfer protein; Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein. (325 aa) |
| | AGA78199.1 | Hypothetical protein. (212 aa) |
| | AGA78200.1 | Hypothetical protein. (228 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (206 aa) |
| | AGA78310.1 | Ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic domain; TIGRFAM: ketol-acid reductoisomerase. (347 aa) |
| | AGA78319.1 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (550 aa) |
| | AGA78453.1 | PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family. (182 aa) |
| | AGA78463.1 | TIGR02757 family protein; PFAM: Protein of unknown function (DUF2400); TIGRFAM: TIGR02757 family protein. (255 aa) |
| | AGA78470.1 | PFAM: PIF1 helicase. (475 aa) |
| | AGA78511.1 | HD superfamily phosphohydrolase; PFAM: HD domain. (409 aa) |
| | AGA78526.1 | PFAM: Uncharacterized conserved protein (DUF2183). (348 aa) |
| | AGA78534.1 | Hypothetical protein. (378 aa) |
| | AGA78583.1 | Isoleucine patch superfamily enzyme, carbonic anhydrase/acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats). (171 aa) |
| | priA | Primosomal protein N'; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (840 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (83 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (123 aa) |
| | AGA78645.1 | ParB-like partition protein; PFAM: ParB-like nuclease domain; TIGRFAM: ParB-like partition proteins; Belongs to the ParB family. (309 aa) |
| | AGA78781.1 | PFAM: Tetratricopeptide repeat. (315 aa) |
| | AGA78810.1 | Hypothetical protein. (400 aa) |
| | AGA78865.1 | PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain. (485 aa) |
| | AGA78884.1 | Hypothetical protein. (384 aa) |
| | AGA79112.1 | PFAM: Serine carboxypeptidase. (481 aa) |
| | AGA79186.1 | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (532 aa) |
| | AGA79214.1 | PFAM: Cytidine and deoxycytidylate deaminase zinc-binding region. (186 aa) |
| | AGA79371.1 | NAD-dependent protein deacetylase, SIR2 family; PFAM: Sir2 family. (231 aa) |
| | AGA79412.1 | PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein. (330 aa) |
| | AGA79465.1 | Topoisomerase IA; PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid. (693 aa) |
| | AGA79479.1 | Hypothetical protein. (276 aa) |
| | AGA79490.1 | DNA replication protein; PFAM: IstB-like ATP binding protein. (239 aa) |
| | dnaG | DNA primase, catalytic core; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (649 aa) |
| | rpmI | PFAM: Ribosomal protein L35; TIGRFAM: ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. (64 aa) |
| | rpsO | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (91 aa) |
| | AGA79689.1 | PFAM: Tetratricopeptide repeat. (240 aa) |
| | AGA79729.1 | Putative P-loop ATPase; PFAM: Virulence-associated protein E. (404 aa) |
| | AGA79730.1 | DNA primase; PFAM: CHC2 zinc finger. (287 aa) |
| | AGA79787.1 | Hypothetical protein. (403 aa) |
| | AGA79795.1 | PFAM: Electron transfer DM13. (143 aa) |
| | AGA79796.1 | PFAM: ATPase family associated with various cellular activities (AAA). (435 aa) |
| | AGA79798.1 | PFAM: Tetratricopeptide repeat. (289 aa) |
| | AGA79804.1 | Hypothetical protein. (951 aa) |
| | AGA79915.1 | Hypothetical protein. (215 aa) |
| | AGA79916.1 | Hypothetical protein. (223 aa) |
| | AGA79961.1 | Hypothetical protein; PFAM: ASPIC and UnbV. (1107 aa) |
| | AGA80020.1 | PFAM: Toprim domain; DNA topoisomerase; TIGRFAM: DNA topoisomerase III, bacteria and conjugative plasmid. (780 aa) |
| | AGA80072.1 | Hypothetical protein. (238 aa) |
| | AGA80100.1 | Hypothetical protein; PFAM: Uncharacterised ACR, COG2135; Belongs to the SOS response-associated peptidase family. (232 aa) |
| | AGA80107.1 | Hypothetical protein; PFAM: ASPIC and UnbV. (1101 aa) |
| | cutC | Uncharacterized protein involved in copper resistance; Participates in the control of copper homeostasis. Belongs to the CutC family. (247 aa) |
| | AGA80267.1 | DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (111 aa) |
| | AGA80281.1 | PFAM: Tetratricopeptide repeat. (582 aa) |
| | AGA80303.1 | PFAM: Homologues of TraJ from Bacteroides conjugative transposon; TIGRFAM: Bacteroides conjugative transposon TraJ protein. (339 aa) |
| | AGA80305.1 | Hypothetical protein. (220 aa) |
| | AGA80306.1 | Hypothetical protein. (231 aa) |
| | AGA80404.1 | PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain. (458 aa) |
| | AGA80438.1 | DNA repair protein; PFAM: Protein of unknown function (DUF2466). (154 aa) |
| | AGA80536.1 | DNA repair protein; PFAM: Protein of unknown function (DUF2466). (111 aa) |
