(60 nodes) Mixed, incl. Rhs repeat-associated core, and Extracellular region network (Solitalea canadensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AFD05319.1	Hypothetical protein. (1181 aa)
	AFD05320.1	RHS repeat-associated core domain protein. (1451 aa)
	AFD05321.1	Hypothetical protein. (216 aa)
	AFD06537.1	Hypothetical protein. (1075 aa)
	AFD06538.1	RHS repeat-associated core domain protein. (1293 aa)
	AFD06539.1	Hypothetical protein. (59 aa)
	AFD06619.1	Hypothetical protein. (1202 aa)
	AFD06620.1	RHS repeat-associated core domain protein. (1163 aa)
	AFD06621.1	Hypothetical protein. (145 aa)
	AFD06636.1	Prepilin-type N-terminal cleavage/methylation domain-containing protein; PFAM: Prokaryotic N-terminal methylation motif. (139 aa)
	AFD06637.1	PFAM: Type IV leader peptidase family. (175 aa)
	AFD06638.1	Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain. (477 aa)
	AFD06639.1	Type II secretory pathway, component PulD; PFAM: Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein. (637 aa)
	AFD06640.1	PFAM: Fimbrial assembly protein (PilN). (408 aa)
	AFD06641.1	Hypothetical protein. (164 aa)
	AFD06642.1	Hypothetical protein. (370 aa)
	AFD06643.1	Hypothetical protein. (396 aa)
	AFD06644.1	Hypothetical protein. (347 aa)
	AFD06645.1	Hypothetical protein. (1190 aa)
	AFD06646.1	RHS repeat-associated core domain protein. (1132 aa)
	AFD06647.1	Hypothetical protein. (148 aa)
	AFD06652.1	Hypothetical protein. (1209 aa)
	AFD06653.1	RHS repeat-associated core domain protein. (1131 aa)
	AFD06654.1	Ankyrin repeat protein. (299 aa)
	AFD06655.1	RHS repeat-associated core domain protein. (339 aa)
	AFD06656.1	Hypothetical protein. (159 aa)
	AFD06657.1	RHS repeat-associated core domain protein. (169 aa)
	AFD06658.1	Hypothetical protein. (118 aa)
	AFD06659.1	Hypothetical protein. (91 aa)
	AFD06660.1	Hypothetical protein. (320 aa)
	AFD06661.1	Hypothetical protein. (163 aa)
	AFD06662.1	Hypothetical protein. (212 aa)
	AFD06663.1	Hypothetical protein. (236 aa)
	AFD06664.1	Hypothetical protein. (326 aa)
	AFD06665.1	Hypothetical protein. (397 aa)
	AFD06666.1	Hypothetical protein. (120 aa)
	AFD06667.1	Hypothetical protein. (160 aa)
	AFD06668.1	Type II secretory pathway, component PulF; PFAM: Bacterial type II secretion system protein F domain. (384 aa)
	AFD06697.1	PFAM: PKD domain. (1306 aa)
	AFD06698.1	RHS repeat-associated core domain protein. (1255 aa)
	AFD06699.1	Hypothetical protein. (130 aa)
	AFD06738.1	RHS repeat-associated core domain protein. (974 aa)
	AFD07248.1	RHS repeat-associated core domain protein; PFAM: Protein of unknown function (DUF1557). (1437 aa)
	AFD07249.1	Hypothetical protein. (1077 aa)
	AFD07431.1	Hypothetical protein. (212 aa)
	AFD07432.1	RHS repeat-associated core domain protein. (1127 aa)
	AFD07433.1	Hypothetical protein. (1094 aa)
	AFD07509.1	RHS repeat-associated core domain protein. (915 aa)
	AFD07513.1	Hypothetical protein. (123 aa)
	AFD07514.1	RHS repeat-associated core domain protein. (1182 aa)
	AFD07515.1	Hypothetical protein. (1224 aa)
	AFD07516.1	Hypothetical protein. (436 aa)
	AFD07527.1	Hypothetical protein. (80 aa)
	AFD07528.1	RHS repeat-associated core domain protein. (1189 aa)
	AFD07529.1	Hypothetical protein. (611 aa)
	AFD07530.1	Hypothetical protein. (526 aa)
	AFD08098.1	Hypothetical protein. (133 aa)
	AFD08099.1	TIGRFAM: RHS repeat-associated core domain. (1133 aa)
	AFD08100.1	Hypothetical protein; TIGRFAM: YD repeat (two copies). (555 aa)
	AFD08101.1	Hypothetical protein. (659 aa)

Your Current Organism:

Solitalea canadensis

NCBI taxonomy Id: 929556
Other names: S. canadensis DSM 3403, Solitalea canadensis DSM 3403, Solitalea canadensis IFO 15130, Solitalea canadensis NBRC 15130, Solitalea canadensis str. DSM 3403, Solitalea canadensis strain DSM 3403

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFD05319.1	AFD05320.1	Solca_0167	Solca_0168	Hypothetical protein.	RHS repeat-associated core domain protein.	0.934
AFD05319.1	AFD05321.1	Solca_0167	Solca_0169	Hypothetical protein.	Hypothetical protein.	0.723
AFD05319.1	AFD06538.1	Solca_0167	Solca_1458	Hypothetical protein.	RHS repeat-associated core domain protein.	0.774
AFD05319.1	AFD06620.1	Solca_0167	Solca_1547	Hypothetical protein.	RHS repeat-associated core domain protein.	0.774
AFD05319.1	AFD06646.1	Solca_0167	Solca_1574	Hypothetical protein.	RHS repeat-associated core domain protein.	0.776
AFD05319.1	AFD06653.1	Solca_0167	Solca_1585	Hypothetical protein.	RHS repeat-associated core domain protein.	0.775
AFD05319.1	AFD06655.1	Solca_0167	Solca_1587	Hypothetical protein.	RHS repeat-associated core domain protein.	0.752
AFD05319.1	AFD06657.1	Solca_0167	Solca_1589	Hypothetical protein.	RHS repeat-associated core domain protein.	0.759
AFD05319.1	AFD06665.1	Solca_0167	Solca_1598	Hypothetical protein.	Hypothetical protein.	0.427
AFD05319.1	AFD06698.1	Solca_0167	Solca_1631	Hypothetical protein.	RHS repeat-associated core domain protein.	0.776
AFD05319.1	AFD06738.1	Solca_0167	Solca_1672	Hypothetical protein.	RHS repeat-associated core domain protein.	0.772
AFD05319.1	AFD07248.1	Solca_0167	Solca_2202	Hypothetical protein.	RHS repeat-associated core domain protein; PFAM: Protein of unknown function (DUF1557).	0.774
AFD05319.1	AFD07432.1	Solca_0167	Solca_2391	Hypothetical protein.	RHS repeat-associated core domain protein.	0.774
AFD05319.1	AFD07509.1	Solca_0167	Solca_2469	Hypothetical protein.	RHS repeat-associated core domain protein.	0.774
AFD05319.1	AFD07514.1	Solca_0167	Solca_2475	Hypothetical protein.	RHS repeat-associated core domain protein.	0.774
AFD05319.1	AFD07528.1	Solca_0167	Solca_2493	Hypothetical protein.	RHS repeat-associated core domain protein.	0.774
AFD05319.1	AFD08099.1	Solca_0167	Solca_3083	Hypothetical protein.	TIGRFAM: RHS repeat-associated core domain.	0.774
AFD05320.1	AFD05319.1	Solca_0168	Solca_0167	RHS repeat-associated core domain protein.	Hypothetical protein.	0.934
AFD05320.1	AFD05321.1	Solca_0168	Solca_0169	RHS repeat-associated core domain protein.	Hypothetical protein.	0.773
AFD05320.1	AFD06537.1	Solca_0168	Solca_1457	RHS repeat-associated core domain protein.	Hypothetical protein.	0.772

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