(25 nodes) Cytosolic ribosome network (Bipolaris zeicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6XVB1_COCCA	DCUN1 domain-containing protein. (639 aa)
	W6XWA0_COCCA	Uncharacterized protein. (148 aa)
	W6XYM8_COCCA	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family. (208 aa)
	W6XYQ4_COCCA	KOW domain-containing protein. (135 aa)
	W6XYS3_COCCA	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (192 aa)
	W6Y3N9_COCCA	Uncharacterized protein. (193 aa)
	W6Y905_COCCA	Ribosomal_L7Ae domain-containing protein. (110 aa)
	W6Y9L6_COCCA	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (191 aa)
	W6YD08_COCCA	Uncharacterized protein. (202 aa)
	W6YES0_COCCA	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (299 aa)
	W6YGK1_COCCA	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (186 aa)
	W6YHV6_COCCA	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (142 aa)
	W6YHX6_COCCA	Zn(2)-C6 fungal-type domain-containing protein. (992 aa)
	W6YI50_COCCA	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (122 aa)
	W6YIC2_COCCA	Uncharacterized protein. (68 aa)
	W6YIL5_COCCA	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (392 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (255 aa)
	W6YMM0_COCCA	WD_REPEATS_REGION domain-containing protein. (316 aa)
	COCCADRAFT_311	Ribosomal_L2_C domain-containing protein. (254 aa)
	W6YPU8_COCCA	Ribosomal_L7Ae domain-containing protein. (264 aa)
	W6YTR4_COCCA	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	W6Z0U0_COCCA	Ribosomal_L18e/L15P domain-containing protein; Belongs to the universal ribosomal protein uL15 family. (148 aa)
	W6Z216_COCCA	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	W6Z5L3_COCCA	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (239 aa)

Your Current Organism:

Bipolaris zeicola

NCBI taxonomy Id: 930089
Other names: B. zeicola 26-R-13, Bipolaris zeicola 26-R-13, Cochliobolus carbonum 26-R-13

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCCADRAFT_311	RPS0	W6YNX2	W6YEW5	Ribosomal_L2_C domain-containing protein.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
COCCADRAFT_311	RPS1	W6YNX2	W6YK78	Ribosomal_L2_C domain-containing protein.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
COCCADRAFT_311	W6XVB1_COCCA	W6YNX2	W6XVB1	Ribosomal_L2_C domain-containing protein.	DCUN1 domain-containing protein.	0.999
COCCADRAFT_311	W6XWA0_COCCA	W6YNX2	W6XWA0	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.999
COCCADRAFT_311	W6XYM8_COCCA	W6YNX2	W6XYM8	Ribosomal_L2_C domain-containing protein.	Ribosomal_S7 domain-containing protein; Belongs to the universal ribosomal protein uS7 family.	0.999
COCCADRAFT_311	W6XYQ4_COCCA	W6YNX2	W6XYQ4	Ribosomal_L2_C domain-containing protein.	KOW domain-containing protein.	0.999
COCCADRAFT_311	W6XYS3_COCCA	W6YNX2	W6XYS3	Ribosomal_L2_C domain-containing protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
COCCADRAFT_311	W6Y3N9_COCCA	W6YNX2	W6Y3N9	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.999
COCCADRAFT_311	W6Y905_COCCA	W6YNX2	W6Y905	Ribosomal_L2_C domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.999
COCCADRAFT_311	W6Y9L6_COCCA	W6YNX2	W6Y9L6	Ribosomal_L2_C domain-containing protein.	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
COCCADRAFT_311	W6YD08_COCCA	W6YNX2	W6YD08	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.999
COCCADRAFT_311	W6YES0_COCCA	W6YNX2	W6YES0	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.999
COCCADRAFT_311	W6YGK1_COCCA	W6YNX2	W6YGK1	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
COCCADRAFT_311	W6YHV6_COCCA	W6YNX2	W6YHV6	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
COCCADRAFT_311	W6YHX6_COCCA	W6YNX2	W6YHX6	Ribosomal_L2_C domain-containing protein.	Zn(2)-C6 fungal-type domain-containing protein.	0.999
COCCADRAFT_311	W6YI50_COCCA	W6YNX2	W6YI50	Ribosomal_L2_C domain-containing protein.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
COCCADRAFT_311	W6YIC2_COCCA	W6YNX2	W6YIC2	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.999
COCCADRAFT_311	W6YIL5_COCCA	W6YNX2	W6YIL5	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.999
COCCADRAFT_311	W6YMM0_COCCA	W6YNX2	W6YMM0	Ribosomal_L2_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
COCCADRAFT_311	W6YPU8_COCCA	W6YNX2	W6YPU8	Ribosomal_L2_C domain-containing protein.	Ribosomal_L7Ae domain-containing protein.	0.999