(12 nodes) Zinc-binding ribosomal protein, and Cytosolic large ribosomal subunit network (Bipolaris zeicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6XR85_COCCA	Ribosomal_L14e domain-containing protein. (545 aa)
	W6Y0D4_COCCA	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family. (141 aa)
	W6Y2Q1_COCCA	Uncharacterized protein. (146 aa)
	W6Y9K9_COCCA	Uncharacterized protein. (88 aa)
	W6YB77_COCCA	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (201 aa)
	W6YEH3_COCCA	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (215 aa)
	W6YH82_COCCA	Ribosomal protein L37; Binds to the 23S rRNA. (94 aa)
	W6YJ20_COCCA	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (81 aa)
	W6YK68_COCCA	Uncharacterized protein. (51 aa)
	W6YLX5_COCCA	Uncharacterized protein. (114 aa)
	COCCADRAFT_662	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family. (179 aa)
	W6YTA4_COCCA	40S ribosomal protein S27. (82 aa)

Your Current Organism:

Bipolaris zeicola

NCBI taxonomy Id: 930089
Other names: B. zeicola 26-R-13, Bipolaris zeicola 26-R-13, Cochliobolus carbonum 26-R-13

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCCADRAFT_662	W6XR85_COCCA	W6YMB4	W6XR85	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Ribosomal_L14e domain-containing protein.	0.999
COCCADRAFT_662	W6Y0D4_COCCA	W6YMB4	W6Y0D4	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
COCCADRAFT_662	W6Y2Q1_COCCA	W6YMB4	W6Y2Q1	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein.	0.999
COCCADRAFT_662	W6Y9K9_COCCA	W6YMB4	W6Y9K9	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein.	0.999
COCCADRAFT_662	W6YB77_COCCA	W6YMB4	W6YB77	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
COCCADRAFT_662	W6YEH3_COCCA	W6YMB4	W6YEH3	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
COCCADRAFT_662	W6YH82_COCCA	W6YMB4	W6YH82	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
COCCADRAFT_662	W6YJ20_COCCA	W6YMB4	W6YJ20	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
COCCADRAFT_662	W6YK68_COCCA	W6YMB4	W6YK68	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein.	0.999
COCCADRAFT_662	W6YLX5_COCCA	W6YMB4	W6YLX5	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	Uncharacterized protein.	0.999
COCCADRAFT_662	W6YTA4_COCCA	W6YMB4	W6YTA4	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	40S ribosomal protein S27.	0.999
W6XR85_COCCA	COCCADRAFT_662	W6XR85	W6YMB4	Ribosomal_L14e domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL5 family.	0.999
W6XR85_COCCA	W6Y0D4_COCCA	W6XR85	W6Y0D4	Ribosomal_L14e domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.999
W6XR85_COCCA	W6Y2Q1_COCCA	W6XR85	W6Y2Q1	Ribosomal_L14e domain-containing protein.	Uncharacterized protein.	0.999
W6XR85_COCCA	W6Y9K9_COCCA	W6XR85	W6Y9K9	Ribosomal_L14e domain-containing protein.	Uncharacterized protein.	0.999
W6XR85_COCCA	W6YB77_COCCA	W6XR85	W6YB77	Ribosomal_L14e domain-containing protein.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
W6XR85_COCCA	W6YEH3_COCCA	W6XR85	W6YEH3	Ribosomal_L14e domain-containing protein.	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.	0.999
W6XR85_COCCA	W6YH82_COCCA	W6XR85	W6YH82	Ribosomal_L14e domain-containing protein.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
W6XR85_COCCA	W6YJ20_COCCA	W6XR85	W6YJ20	Ribosomal_L14e domain-containing protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
W6XR85_COCCA	W6YK68_COCCA	W6XR85	W6YK68	Ribosomal_L14e domain-containing protein.	Uncharacterized protein.	0.999