4 items (Bipolaris zeicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6YF56_COCCA	Uncharacterized protein. (101 aa)
	W6YJX9_COCCA	Cytochrome c domain-containing protein. (336 aa)
	W6XSY3_COCCA	Uncharacterized protein. (104 aa)
	W6Y9F3_COCCA	Uncharacterized protein. (57 aa)

Your Current Organism:

Bipolaris zeicola

NCBI taxonomy Id: 930089
Other names: B. zeicola 26-R-13, Bipolaris zeicola 26-R-13, Cochliobolus carbonum 26-R-13

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6XSY3_COCCA	W6Y9F3_COCCA	W6XSY3	W6Y9F3	Uncharacterized protein.	Uncharacterized protein.	0.999
W6XSY3_COCCA	W6YF56_COCCA	W6XSY3	W6YF56	Uncharacterized protein.	Uncharacterized protein.	0.996
W6XSY3_COCCA	W6YJX9_COCCA	W6XSY3	W6YJX9	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.999
W6Y9F3_COCCA	W6XSY3_COCCA	W6Y9F3	W6XSY3	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Y9F3_COCCA	W6YF56_COCCA	W6Y9F3	W6YF56	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Y9F3_COCCA	W6YJX9_COCCA	W6Y9F3	W6YJX9	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.999
W6YF56_COCCA	W6XSY3_COCCA	W6YF56	W6XSY3	Uncharacterized protein.	Uncharacterized protein.	0.996
W6YF56_COCCA	W6Y9F3_COCCA	W6YF56	W6Y9F3	Uncharacterized protein.	Uncharacterized protein.	0.999
W6YF56_COCCA	W6YJX9_COCCA	W6YF56	W6YJX9	Uncharacterized protein.	Cytochrome c domain-containing protein.	0.993
W6YJX9_COCCA	W6XSY3_COCCA	W6YJX9	W6XSY3	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.999
W6YJX9_COCCA	W6Y9F3_COCCA	W6YJX9	W6Y9F3	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.999
W6YJX9_COCCA	W6YF56_COCCA	W6YJX9	W6YF56	Cytochrome c domain-containing protein.	Uncharacterized protein.	0.993