38 items (Bipolaris zeicola) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6Y9B7_COCCA	RRM domain-containing protein. (337 aa)
	W6Y9K5_COCCA	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	W6YAF8_COCCA	Fip1 domain-containing protein. (253 aa)
	W6YBH8_COCCA	G-patch domain-containing protein. (467 aa)
	W6YBL9_COCCA	WD_REPEATS_REGION domain-containing protein. (455 aa)
	W6Y6S6_COCCA	Uncharacterized protein. (300 aa)
	W6Y627_COCCA	SAP domain-containing protein. (273 aa)
	W6Y5L8_COCCA	Uncharacterized protein. (1226 aa)
	W6Y4D8_COCCA	Uncharacterized protein. (593 aa)
	W6Y454_COCCA	Uncharacterized protein. (275 aa)
	CLP1	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (471 aa)
	W6Y3N4_COCCA	ABM domain-containing protein. (128 aa)
	W6Y2E0_COCCA	Uncharacterized protein. (280 aa)
	W6XVZ3_COCCA	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (575 aa)
	W6XVY0_COCCA	Zn(2)-C6 fungal-type domain-containing protein. (1253 aa)
	W6XRX7_COCCA	Uncharacterized protein. (161 aa)
	W6Y1K0_COCCA	Uncharacterized protein. (323 aa)
	W6Y189_COCCA	Uncharacterized protein. (481 aa)
	W6Y127_COCCA	WD_REPEATS_REGION domain-containing protein. (663 aa)
	W6Y0M3_COCCA	Sm domain-containing protein. (93 aa)
	W6XZR6_COCCA	Uncharacterized protein. (211 aa)
	W6YCR8_COCCA	Uncharacterized protein. (239 aa)
	W6YE92_COCCA	Small nuclear ribonucleoprotein G. (84 aa)
	W6YEM1_COCCA	Uncharacterized protein. (591 aa)
	W6YFR6_COCCA	Uncharacterized protein. (262 aa)
	W6YGT8_COCCA	Suf domain-containing protein. (1060 aa)
	W6YI64_COCCA	Uncharacterized protein. (556 aa)
	W6YIP1_COCCA	PWI domain-containing protein. (328 aa)
	W6YJC2_COCCA	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (578 aa)
	W6YK09_COCCA	RRM domain-containing protein. (317 aa)
	W6YKK7_COCCA	RRM domain-containing protein. (206 aa)
	W6YKT0_COCCA	Zn(2)-C6 fungal-type domain-containing protein. (811 aa)
	W6YLV1_COCCA	CID domain-containing protein. (691 aa)
	COCCADRAFT_495	Slu7 domain-containing protein. (476 aa)
	W6YYP2_COCCA	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	W6Z2T4_COCCA	Uncharacterized protein. (349 aa)
	W6XZ16_COCCA	Uncharacterized protein. (552 aa)
	W6XZ05_COCCA	Uncharacterized protein. (353 aa)

Your Current Organism:

Bipolaris zeicola

NCBI taxonomy Id: 930089
Other names: B. zeicola 26-R-13, Bipolaris zeicola 26-R-13, Cochliobolus carbonum 26-R-13

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLP1	W6XVY0_COCCA	W6Y3P8	W6XVY0	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Zn(2)-C6 fungal-type domain-containing protein.	0.460
CLP1	W6XZ05_COCCA	W6Y3P8	W6XZ05	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.554
CLP1	W6XZ16_COCCA	W6Y3P8	W6XZ16	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.809
CLP1	W6Y127_COCCA	W6Y3P8	W6Y127	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	WD_REPEATS_REGION domain-containing protein.	0.663
CLP1	W6Y1K0_COCCA	W6Y3P8	W6Y1K0	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.742
CLP1	W6Y3N4_COCCA	W6Y3P8	W6Y3N4	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	ABM domain-containing protein.	0.618
CLP1	W6Y454_COCCA	W6Y3P8	W6Y454	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.828
CLP1	W6Y4D8_COCCA	W6Y3P8	W6Y4D8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.809
CLP1	W6Y5L8_COCCA	W6Y3P8	W6Y5L8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.741
CLP1	W6Y627_COCCA	W6Y3P8	W6Y627	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	SAP domain-containing protein.	0.618
CLP1	W6Y6S6_COCCA	W6Y3P8	W6Y6S6	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.460
CLP1	W6Y9B7_COCCA	W6Y3P8	W6Y9B7	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RRM domain-containing protein.	0.697
CLP1	W6YAF8_COCCA	W6Y3P8	W6YAF8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Fip1 domain-containing protein.	0.928
CLP1	W6YBH8_COCCA	W6Y3P8	W6YBH8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	G-patch domain-containing protein.	0.460
CLP1	W6YCR8_COCCA	W6Y3P8	W6YCR8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.674
CLP1	W6YGT8_COCCA	W6Y3P8	W6YGT8	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Suf domain-containing protein.	0.940
CLP1	W6YI64_COCCA	W6Y3P8	W6YI64	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Uncharacterized protein.	0.631
CLP1	W6YJC2_COCCA	W6Y3P8	W6YJC2	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.827
CLP1	W6YK09_COCCA	W6Y3P8	W6YK09	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RRM domain-containing protein.	0.994
CLP1	W6YKK7_COCCA	W6Y3P8	W6YKK7	mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation.	RRM domain-containing protein.	0.642