20 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6YUI6_COCMI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	W6YYM3_COCMI	Small nuclear ribonucleoprotein G. (84 aa)
	W6YZG1_COCMI	RRM domain-containing protein. (178 aa)
	W6Z2P4_COCMI	Matrin-type domain-containing protein. (235 aa)
	W6Z3A4_COCMI	Matrin-type domain-containing protein. (498 aa)
	W6Z444_COCMI	Sm domain-containing protein. (93 aa)
	W6Z5N6_COCMI	Sm domain-containing protein. (82 aa)
	W6Z721_COCMI	Uncharacterized protein. (1062 aa)
	W6Z8M6_COCMI	PSP domain-containing protein. (569 aa)
	W6ZAT9_COCMI	Uncharacterized protein. (520 aa)
	W6ZBJ3_COCMI	Small nuclear ribonucleoprotein Sm D3. (116 aa)
	W6ZED8_COCMI	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (130 aa)
	W6ZG81_COCMI	Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)
	W6ZGI6_COCMI	Uncharacterized protein. (331 aa)
	W6ZHQ1_COCMI	CPSF_A domain-containing protein. (1235 aa)
	W6ZIM6_COCMI	RRM domain-containing protein. (127 aa)
	COCMIDRAFT_523	SF3b1 domain-containing protein. (1187 aa)
	W6ZMT3_COCMI	Uncharacterized protein. (108 aa)
	W6ZT49_COCMI	Uncharacterized protein. (244 aa)
	W6ZYS5_COCMI	Small nuclear ribonucleoprotein Sm D2. (117 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCMIDRAFT_523	W6YUI6_COCMI	W6ZLX9	W6YUI6	SF3b1 domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.989
COCMIDRAFT_523	W6YYM3_COCMI	W6ZLX9	W6YYM3	SF3b1 domain-containing protein.	Small nuclear ribonucleoprotein G.	0.983
COCMIDRAFT_523	W6YZG1_COCMI	W6ZLX9	W6YZG1	SF3b1 domain-containing protein.	RRM domain-containing protein.	0.937
COCMIDRAFT_523	W6Z2P4_COCMI	W6ZLX9	W6Z2P4	SF3b1 domain-containing protein.	Matrin-type domain-containing protein.	0.997
COCMIDRAFT_523	W6Z3A4_COCMI	W6ZLX9	W6Z3A4	SF3b1 domain-containing protein.	Matrin-type domain-containing protein.	0.994
COCMIDRAFT_523	W6Z444_COCMI	W6ZLX9	W6Z444	SF3b1 domain-containing protein.	Sm domain-containing protein.	0.990
COCMIDRAFT_523	W6Z5N6_COCMI	W6ZLX9	W6Z5N6	SF3b1 domain-containing protein.	Sm domain-containing protein.	0.946
COCMIDRAFT_523	W6Z721_COCMI	W6ZLX9	W6Z721	SF3b1 domain-containing protein.	Uncharacterized protein.	0.998
COCMIDRAFT_523	W6Z8M6_COCMI	W6ZLX9	W6Z8M6	SF3b1 domain-containing protein.	PSP domain-containing protein.	0.999
COCMIDRAFT_523	W6ZAT9_COCMI	W6ZLX9	W6ZAT9	SF3b1 domain-containing protein.	Uncharacterized protein.	0.994
COCMIDRAFT_523	W6ZBJ3_COCMI	W6ZLX9	W6ZBJ3	SF3b1 domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.922
COCMIDRAFT_523	W6ZED8_COCMI	W6ZLX9	W6ZED8	SF3b1 domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.	0.981
COCMIDRAFT_523	W6ZG81_COCMI	W6ZLX9	W6ZG81	SF3b1 domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.999
COCMIDRAFT_523	W6ZGI6_COCMI	W6ZLX9	W6ZGI6	SF3b1 domain-containing protein.	Uncharacterized protein.	0.999
COCMIDRAFT_523	W6ZHQ1_COCMI	W6ZLX9	W6ZHQ1	SF3b1 domain-containing protein.	CPSF_A domain-containing protein.	0.999
COCMIDRAFT_523	W6ZIM6_COCMI	W6ZLX9	W6ZIM6	SF3b1 domain-containing protein.	RRM domain-containing protein.	0.999
COCMIDRAFT_523	W6ZMT3_COCMI	W6ZLX9	W6ZMT3	SF3b1 domain-containing protein.	Uncharacterized protein.	0.999
COCMIDRAFT_523	W6ZT49_COCMI	W6ZLX9	W6ZT49	SF3b1 domain-containing protein.	Uncharacterized protein.	0.998
COCMIDRAFT_523	W6ZYS5_COCMI	W6ZLX9	W6ZYS5	SF3b1 domain-containing protein.	Small nuclear ribonucleoprotein Sm D2.	0.975
W6YUI6_COCMI	COCMIDRAFT_523	W6YUI6	W6ZLX9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	SF3b1 domain-containing protein.	0.989