(15 nodes) Structural constituent of nuclear pore, and poly(A)+ mRNA export from nucleus network (Bipolaris oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6Z058_COCMI	Peptidase S59 domain-containing protein. (2038 aa)
	W6Z1V5_COCMI	Uncharacterized protein. (1478 aa)
	W6Z2Q2_COCMI	Nsp1_C domain-containing protein. (221 aa)
	W6Z3N9_COCMI	Uncharacterized protein. (1364 aa)
	W6Z467_COCMI	Uncharacterized protein. (239 aa)
	W6Z4Q8_COCMI	Uncharacterized protein. (363 aa)
	W6Z527_COCMI	Uncharacterized protein. (1364 aa)
	W6Z9G2_COCMI	Uncharacterized protein. (562 aa)
	W6ZD88_COCMI	NUP50 domain-containing protein. (1352 aa)
	W6ZEP1_COCMI	Uncharacterized protein. (1126 aa)
	W6ZKF8_COCMI	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1029 aa)
	W6ZM88_COCMI	Nup188_C domain-containing protein. (1877 aa)
	W6ZNC0_COCMI	Nup54 domain-containing protein. (418 aa)
	W6ZU98_COCMI	Uncharacterized protein. (1667 aa)
	W6ZV42_COCMI	TAP-C domain-containing protein. (316 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6Z058_COCMI	W6Z1V5_COCMI	W6Z058	W6Z1V5	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.998
W6Z058_COCMI	W6Z2Q2_COCMI	W6Z058	W6Z2Q2	Peptidase S59 domain-containing protein.	Nsp1_C domain-containing protein.	0.999
W6Z058_COCMI	W6Z3N9_COCMI	W6Z058	W6Z3N9	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.999
W6Z058_COCMI	W6Z467_COCMI	W6Z058	W6Z467	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.640
W6Z058_COCMI	W6Z4Q8_COCMI	W6Z058	W6Z4Q8	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.999
W6Z058_COCMI	W6Z527_COCMI	W6Z058	W6Z527	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.999
W6Z058_COCMI	W6Z9G2_COCMI	W6Z058	W6Z9G2	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.640
W6Z058_COCMI	W6ZD88_COCMI	W6Z058	W6ZD88	Peptidase S59 domain-containing protein.	NUP50 domain-containing protein.	0.655
W6Z058_COCMI	W6ZEP1_COCMI	W6Z058	W6ZEP1	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.998
W6Z058_COCMI	W6ZKF8_COCMI	W6Z058	W6ZKF8	Peptidase S59 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.999
W6Z058_COCMI	W6ZM88_COCMI	W6Z058	W6ZM88	Peptidase S59 domain-containing protein.	Nup188_C domain-containing protein.	0.974
W6Z058_COCMI	W6ZNC0_COCMI	W6Z058	W6ZNC0	Peptidase S59 domain-containing protein.	Nup54 domain-containing protein.	0.996
W6Z058_COCMI	W6ZU98_COCMI	W6Z058	W6ZU98	Peptidase S59 domain-containing protein.	Uncharacterized protein.	0.978
W6Z058_COCMI	W6ZV42_COCMI	W6Z058	W6ZV42	Peptidase S59 domain-containing protein.	TAP-C domain-containing protein.	0.982
W6Z1V5_COCMI	W6Z058_COCMI	W6Z1V5	W6Z058	Uncharacterized protein.	Peptidase S59 domain-containing protein.	0.998
W6Z1V5_COCMI	W6Z2Q2_COCMI	W6Z1V5	W6Z2Q2	Uncharacterized protein.	Nsp1_C domain-containing protein.	0.999
W6Z1V5_COCMI	W6Z3N9_COCMI	W6Z1V5	W6Z3N9	Uncharacterized protein.	Uncharacterized protein.	0.993
W6Z1V5_COCMI	W6Z467_COCMI	W6Z1V5	W6Z467	Uncharacterized protein.	Uncharacterized protein.	0.924
W6Z1V5_COCMI	W6Z4Q8_COCMI	W6Z1V5	W6Z4Q8	Uncharacterized protein.	Uncharacterized protein.	0.986
W6Z1V5_COCMI	W6Z527_COCMI	W6Z1V5	W6Z527	Uncharacterized protein.	Uncharacterized protein.	0.993