(37 nodes) Basal transcription factors, and Transcription factor TFIID complex network (Bipolaris oryzae)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

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Your Input:
	W6YP06_COCMI	RING-type domain-containing protein. (319 aa)
	W6YS43_COCMI	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (264 aa)
	W6YSM1_COCMI	TAF domain-containing protein. (476 aa)
	W6YUK5_COCMI	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (132 aa)
	W6YUU5_COCMI	Uncharacterized protein. (346 aa)
	W6YW47_COCMI	Uncharacterized protein. (166 aa)
	W6YYS8_COCMI	Uncharacterized protein. (423 aa)
	W6Z083_COCMI	C2H2-type domain-containing protein. (718 aa)
	W6Z0B5_COCMI	Uncharacterized protein. (407 aa)
	W6Z192_COCMI	Uncharacterized protein. (274 aa)
	W6Z4Q3_COCMI	Protein kinase domain-containing protein. (417 aa)
	W6Z7B9_COCMI	Uncharacterized protein. (249 aa)
	W6Z7E0_COCMI	TAFII55_N domain-containing protein. (559 aa)
	W6Z8R4_COCMI	DUF3591 domain-containing protein. (1124 aa)
	W6Z8W7_COCMI	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...] (222 aa)
	W6Z975_COCMI	Protein kinase domain-containing protein. (657 aa)
	W6ZBE0_COCMI	BSD domain-containing protein. (653 aa)
	W6ZBH4_COCMI	Uncharacterized protein. (804 aa)
	W6ZC45_COCMI	Uncharacterized protein. (713 aa)
	W6ZD73_COCMI	Acyl_transf_3 domain-containing protein. (444 aa)
	W6ZDX5_COCMI	Helicase ATP-binding domain-containing protein. (799 aa)
	W6ZGJ3_COCMI	Uncharacterized protein. (1545 aa)
	W6ZGZ8_COCMI	TFIIB-type domain-containing protein. (366 aa)
	W6ZHG3_COCMI	TAFII28 domain-containing protein. (329 aa)
	W6ZIY6_COCMI	DUF4211 domain-containing protein. (653 aa)
	W6ZJ05_COCMI	Uncharacterized protein. (72 aa)
	W6ZJK6_COCMI	Uncharacterized protein. (377 aa)
	W6ZK02_COCMI	RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (482 aa)
	W6ZL47_COCMI	Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation; Belongs to the TFIIA subunit 2 family. (113 aa)
	W6ZQU6_COCMI	TFIID_20kDa domain-containing protein. (659 aa)
	W6ZRJ4_COCMI	Uncharacterized protein. (252 aa)
	W6ZSE3_COCMI	Helicase ATP-binding domain-containing protein. (1449 aa)
	W6ZST2_COCMI	Uncharacterized protein. (375 aa)
	W6ZV01_COCMI	BTP domain-containing protein. (246 aa)
	W6ZVY9_COCMI	HTH TFE/IIEalpha-type domain-containing protein. (423 aa)
	W6ZX63_COCMI	Uncharacterized protein. (729 aa)
	W7A4A7_COCMI	Uncharacterized protein. (350 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YP06_COCMI	W6YS43_COCMI	W6YP06	W6YS43	RING-type domain-containing protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.949
W6YP06_COCMI	W6YSM1_COCMI	W6YP06	W6YSM1	RING-type domain-containing protein.	TAF domain-containing protein.	0.891
W6YP06_COCMI	W6YUK5_COCMI	W6YP06	W6YUK5	RING-type domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.966
W6YP06_COCMI	W6YUU5_COCMI	W6YP06	W6YUU5	RING-type domain-containing protein.	Uncharacterized protein.	0.477
W6YP06_COCMI	W6YW47_COCMI	W6YP06	W6YW47	RING-type domain-containing protein.	Uncharacterized protein.	0.896
W6YP06_COCMI	W6YYS8_COCMI	W6YP06	W6YYS8	RING-type domain-containing protein.	Uncharacterized protein.	0.999
W6YP06_COCMI	W6Z083_COCMI	W6YP06	W6Z083	RING-type domain-containing protein.	C2H2-type domain-containing protein.	0.956
W6YP06_COCMI	W6Z192_COCMI	W6YP06	W6Z192	RING-type domain-containing protein.	Uncharacterized protein.	0.592
W6YP06_COCMI	W6Z4Q3_COCMI	W6YP06	W6Z4Q3	RING-type domain-containing protein.	Protein kinase domain-containing protein.	0.999
W6YP06_COCMI	W6Z7B9_COCMI	W6YP06	W6Z7B9	RING-type domain-containing protein.	Uncharacterized protein.	0.972
W6YP06_COCMI	W6Z7E0_COCMI	W6YP06	W6Z7E0	RING-type domain-containing protein.	TAFII55_N domain-containing protein.	0.857
W6YP06_COCMI	W6Z8R4_COCMI	W6YP06	W6Z8R4	RING-type domain-containing protein.	DUF3591 domain-containing protein.	0.872
W6YP06_COCMI	W6Z8W7_COCMI	W6YP06	W6Z8W7	RING-type domain-containing protein.	Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]	0.876
W6YP06_COCMI	W6Z975_COCMI	W6YP06	W6Z975	RING-type domain-containing protein.	Protein kinase domain-containing protein.	0.876
W6YP06_COCMI	W6ZBE0_COCMI	W6YP06	W6ZBE0	RING-type domain-containing protein.	BSD domain-containing protein.	0.999
W6YP06_COCMI	W6ZBH4_COCMI	W6YP06	W6ZBH4	RING-type domain-containing protein.	Uncharacterized protein.	0.999
W6YP06_COCMI	W6ZC45_COCMI	W6YP06	W6ZC45	RING-type domain-containing protein.	Uncharacterized protein.	0.920
W6YP06_COCMI	W6ZD73_COCMI	W6YP06	W6ZD73	RING-type domain-containing protein.	Acyl_transf_3 domain-containing protein.	0.745
W6YP06_COCMI	W6ZDX5_COCMI	W6YP06	W6ZDX5	RING-type domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.999
W6YP06_COCMI	W6ZGJ3_COCMI	W6YP06	W6ZGJ3	RING-type domain-containing protein.	Uncharacterized protein.	0.898