(36 nodes) Mixed, incl. SAGA complex, and Ubiquitin carboxyl-terminal hydrolase network (Bipolaris oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6YMG2_COCMI	Uncharacterized protein. (517 aa)
	W6YRQ9_COCMI	Uncharacterized protein. (264 aa)
	W6YS67_COCMI	USP domain-containing protein. (788 aa)
	W6YSK3_COCMI	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (3807 aa)
	W6YUN0_COCMI	Uncharacterized protein. (436 aa)
	W6YWB2_COCMI	F-box domain-containing protein. (432 aa)
	W6YWN6_COCMI	Uncharacterized protein. (1027 aa)
	W6YYZ2_COCMI	Uncharacterized protein. (622 aa)
	W6Z0K6_COCMI	Uncharacterized protein. (227 aa)
	W6Z155_COCMI	Uncharacterized protein. (275 aa)
	W6Z6D3_COCMI	CFEM domain-containing protein. (197 aa)
	W6Z9V0_COCMI	Uncharacterized protein. (496 aa)
	W6ZA37_COCMI	NmrA domain-containing protein. (307 aa)
	W6ZBR7_COCMI	Uncharacterized protein. (495 aa)
	W6ZDB0_COCMI	Uncharacterized protein. (446 aa)
	W6ZEI1_COCMI	Ubiquitin carboxyl-terminal hydrolase. (517 aa)
	W6ZFF6_COCMI	Uncharacterized protein. (167 aa)
	W6ZH22_COCMI	Uncharacterized protein. (451 aa)
	W6ZHF6_COCMI	Uncharacterized protein. (327 aa)
	W6ZIY2_COCMI	Uncharacterized protein. (1070 aa)
	W6ZJ10_COCMI	USP domain-containing protein. (749 aa)
	W6ZK12_COCMI	Ubiquitin carboxyl-terminal hydrolase. (621 aa)
	COCMIDRAFT_871	Uncharacterized protein. (193 aa)
	W6ZLH1_COCMI	Uncharacterized protein. (182 aa)
	W6ZMQ3_COCMI	SGF29 C-terminal domain-containing protein. (362 aa)
	W6ZMU6_COCMI	SCA7 domain-containing protein. (412 aa)
	W6ZMU7_COCMI	Uncharacterized protein. (364 aa)
	W6ZP35_COCMI	Uncharacterized protein. (401 aa)
	W6ZPB2_COCMI	Altered inheritance of mitochondria protein 24, mitochondrial. (250 aa)
	W6ZRL3_COCMI	Bromo domain-containing protein. (1139 aa)
	W6ZRU9_COCMI	Uncharacterized protein. (332 aa)
	W6ZXM1_COCMI	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation. (516 aa)
	W6ZYF8_COCMI	Uncharacterized protein. (386 aa)
	W7A0A9_COCMI	Uncharacterized protein. (970 aa)
	COCMIDRAFT_529	Uncharacterized protein. (343 aa)
	W7A593_COCMI	WD_REPEATS_REGION domain-containing protein. (673 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCMIDRAFT_529	W6YS67_COCMI	W7A4D6	W6YS67	Uncharacterized protein.	USP domain-containing protein.	0.528
COCMIDRAFT_529	W6YSK3_COCMI	W7A4D6	W6YSK3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.860
COCMIDRAFT_529	W6YYZ2_COCMI	W7A4D6	W6YYZ2	Uncharacterized protein.	Uncharacterized protein.	0.873
COCMIDRAFT_529	W6Z155_COCMI	W7A4D6	W6Z155	Uncharacterized protein.	Uncharacterized protein.	0.856
COCMIDRAFT_529	W6ZDB0_COCMI	W7A4D6	W6ZDB0	Uncharacterized protein.	Uncharacterized protein.	0.691
COCMIDRAFT_529	W6ZEI1_COCMI	W7A4D6	W6ZEI1	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.852
COCMIDRAFT_529	W6ZHF6_COCMI	W7A4D6	W6ZHF6	Uncharacterized protein.	Uncharacterized protein.	0.762
COCMIDRAFT_529	W6ZIY2_COCMI	W7A4D6	W6ZIY2	Uncharacterized protein.	Uncharacterized protein.	0.478
COCMIDRAFT_529	W6ZJ10_COCMI	W7A4D6	W6ZJ10	Uncharacterized protein.	USP domain-containing protein.	0.528
COCMIDRAFT_529	W6ZK12_COCMI	W7A4D6	W6ZK12	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.528
COCMIDRAFT_529	W6ZMQ3_COCMI	W7A4D6	W6ZMQ3	Uncharacterized protein.	SGF29 C-terminal domain-containing protein.	0.783
COCMIDRAFT_529	W6ZMU6_COCMI	W7A4D6	W6ZMU6	Uncharacterized protein.	SCA7 domain-containing protein.	0.840
COCMIDRAFT_529	W6ZRL3_COCMI	W7A4D6	W6ZRL3	Uncharacterized protein.	Bromo domain-containing protein.	0.713
COCMIDRAFT_529	W6ZXM1_COCMI	W7A4D6	W6ZXM1	Uncharacterized protein.	Transcriptional adapter 2; Functions as component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA and ADA. SAGA is involved in RNA polymerase II-dependent transcriptional regulation.	0.838
COCMIDRAFT_529	W7A0A9_COCMI	W7A4D6	W7A0A9	Uncharacterized protein.	Uncharacterized protein.	0.569
COCMIDRAFT_529	W7A593_COCMI	W7A4D6	W7A593	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.616
COCMIDRAFT_871	W6ZJ10_COCMI	W6ZK20	W6ZJ10	Uncharacterized protein.	USP domain-containing protein.	0.563
W6YMG2_COCMI	W6YSK3_COCMI	W6YMG2	W6YSK3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.403
W6YMG2_COCMI	W6Z155_COCMI	W6YMG2	W6Z155	Uncharacterized protein.	Uncharacterized protein.	0.400
W6YMG2_COCMI	W6ZHF6_COCMI	W6YMG2	W6ZHF6	Uncharacterized protein.	Uncharacterized protein.	0.400