21 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6YU26_COCMI	Uncharacterized protein. (358 aa)
	W6YWE9_COCMI	GOLD domain-containing protein. (203 aa)
	W6YWT2_COCMI	Arf-GAP domain-containing protein. (417 aa)
	W6YX39_COCMI	GOLD domain-containing protein. (211 aa)
	W6YYV6_COCMI	Uncharacterized protein. (1437 aa)
	W6YYZ0_COCMI	Uncharacterized protein. (304 aa)
	W6Z1G1_COCMI	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family. (297 aa)
	W6Z1Y8_COCMI	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (859 aa)
	W6Z422_COCMI	GOLD domain-containing protein. (219 aa)
	W6Z907_COCMI	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex. (199 aa)
	W6Z9I5_COCMI	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (529 aa)
	W6ZAM6_COCMI	GOLD domain-containing protein. (220 aa)
	W6ZAX3_COCMI	ER lumen protein-retaining receptor. (217 aa)
	W6ZB12_COCMI	Uncharacterized protein. (391 aa)
	W6ZB33_COCMI	SEC7 domain-containing protein. (1837 aa)
	W6ZC64_COCMI	Uncharacterized protein. (598 aa)
	W6ZD45_COCMI	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (917 aa)
	W6ZF21_COCMI	Arf-GAP domain-containing protein. (471 aa)
	W6ZJ68_COCMI	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (956 aa)
	W6ZL24_COCMI	SEC7 domain-containing protein. (1610 aa)
	W6ZQV6_COCMI	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. (1220 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YU26_COCMI	W6YWE9_COCMI	W6YU26	W6YWE9	Uncharacterized protein.	GOLD domain-containing protein.	0.683
W6YU26_COCMI	W6YWT2_COCMI	W6YU26	W6YWT2	Uncharacterized protein.	Arf-GAP domain-containing protein.	0.636
W6YU26_COCMI	W6YX39_COCMI	W6YU26	W6YX39	Uncharacterized protein.	GOLD domain-containing protein.	0.556
W6YU26_COCMI	W6YYV6_COCMI	W6YU26	W6YYV6	Uncharacterized protein.	Uncharacterized protein.	0.567
W6YU26_COCMI	W6YYZ0_COCMI	W6YU26	W6YYZ0	Uncharacterized protein.	Uncharacterized protein.	0.565
W6YU26_COCMI	W6Z1G1_COCMI	W6YU26	W6Z1G1	Uncharacterized protein.	Coatomer subunit epsilon; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. Belongs to the COPE family.	0.642
W6YU26_COCMI	W6Z1Y8_COCMI	W6YU26	W6Z1Y8	Uncharacterized protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.700
W6YU26_COCMI	W6Z422_COCMI	W6YU26	W6Z422	Uncharacterized protein.	GOLD domain-containing protein.	0.759
W6YU26_COCMI	W6Z907_COCMI	W6YU26	W6Z907	Uncharacterized protein.	Coatomer subunit zeta; The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.	0.712
W6YU26_COCMI	W6Z9I5_COCMI	W6YU26	W6Z9I5	Uncharacterized protein.	Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.728
W6YU26_COCMI	W6ZAM6_COCMI	W6YU26	W6ZAM6	Uncharacterized protein.	GOLD domain-containing protein.	0.610
W6YU26_COCMI	W6ZB12_COCMI	W6YU26	W6ZB12	Uncharacterized protein.	Uncharacterized protein.	0.565
W6YU26_COCMI	W6ZC64_COCMI	W6YU26	W6ZC64	Uncharacterized protein.	Uncharacterized protein.	0.601
W6YU26_COCMI	W6ZD45_COCMI	W6YU26	W6ZD45	Uncharacterized protein.	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.694
W6YU26_COCMI	W6ZF21_COCMI	W6YU26	W6ZF21	Uncharacterized protein.	Arf-GAP domain-containing protein.	0.636
W6YU26_COCMI	W6ZJ68_COCMI	W6YU26	W6ZJ68	Uncharacterized protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.741
W6YU26_COCMI	W6ZL24_COCMI	W6YU26	W6ZL24	Uncharacterized protein.	SEC7 domain-containing protein.	0.650
W6YU26_COCMI	W6ZQV6_COCMI	W6YU26	W6ZQV6	Uncharacterized protein.	Coatomer subunit alpha; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network.	0.708
W6YWE9_COCMI	W6YU26_COCMI	W6YWE9	W6YU26	GOLD domain-containing protein.	Uncharacterized protein.	0.683
W6YWE9_COCMI	W6YX39_COCMI	W6YWE9	W6YX39	GOLD domain-containing protein.	GOLD domain-containing protein.	0.943