(5 nodes) Mixed, incl. Ribosomal protein L22/L17, and Ribosomal protein S12/S23 network (Bipolaris oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6YU41_COCMI	Uncharacterized protein. (262 aa)
	W6Z257_COCMI	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (249 aa)
	W6ZG84_COCMI	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (383 aa)
	W6ZKZ4_COCMI	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family. (179 aa)
	W7A1R1_COCMI	Uncharacterized protein. (112 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YU41_COCMI	W6Z257_COCMI	W6YU41	W6Z257	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
W6YU41_COCMI	W6ZG84_COCMI	W6YU41	W6ZG84	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
W6YU41_COCMI	W6ZKZ4_COCMI	W6YU41	W6ZKZ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
W6YU41_COCMI	W7A1R1_COCMI	W6YU41	W7A1R1	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Z257_COCMI	W6YU41_COCMI	W6Z257	W6YU41	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.999
W6Z257_COCMI	W6ZG84_COCMI	W6Z257	W6ZG84	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.999
W6Z257_COCMI	W6ZKZ4_COCMI	W6Z257	W6ZKZ4	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999
W6Z257_COCMI	W7A1R1_COCMI	W6Z257	W7A1R1	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.999
W6ZG84_COCMI	W6YU41_COCMI	W6ZG84	W6YU41	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.998
W6ZG84_COCMI	W6Z257_COCMI	W6ZG84	W6Z257	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
W6ZG84_COCMI	W6ZKZ4_COCMI	W6ZG84	W6ZKZ4	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.998
W6ZG84_COCMI	W7A1R1_COCMI	W6ZG84	W7A1R1	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	Uncharacterized protein.	0.998
W6ZKZ4_COCMI	W6YU41_COCMI	W6ZKZ4	W6YU41	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
W6ZKZ4_COCMI	W6Z257_COCMI	W6ZKZ4	W6Z257	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
W6ZKZ4_COCMI	W6ZG84_COCMI	W6ZKZ4	W6ZG84	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
W6ZKZ4_COCMI	W7A1R1_COCMI	W6ZKZ4	W7A1R1	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	Uncharacterized protein.	0.999
W7A1R1_COCMI	W6YU41_COCMI	W7A1R1	W6YU41	Uncharacterized protein.	Uncharacterized protein.	0.999
W7A1R1_COCMI	W6Z257_COCMI	W7A1R1	W6Z257	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
W7A1R1_COCMI	W6ZG84_COCMI	W7A1R1	W6ZG84	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.998
W7A1R1_COCMI	W6ZKZ4_COCMI	W7A1R1	W6ZKZ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.999