15 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6YU68_COCMI	Uncharacterized protein. (225 aa)
	W6YVW5_COCMI	Uncharacterized protein. (314 aa)
	W6YWH9_COCMI	Uncharacterized protein. (212 aa)
	W6Z264_COCMI	Uncharacterized protein. (213 aa)
	W6Z2D3_COCMI	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family. (274 aa)
	W6Z8W0_COCMI	Uncharacterized protein. (227 aa)
	W6ZFD4_COCMI	Uncharacterized protein. (422 aa)
	W6ZGI0_COCMI	Uncharacterized protein. (214 aa)
	W6ZL07_COCMI	Uncharacterized protein. (523 aa)
	W6ZL22_COCMI	GLUE N-terminal domain-containing protein. (594 aa)
	W6ZQ69_COCMI	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process. (235 aa)
	W6ZRL2_COCMI	Uncharacterized protein; Belongs to the AAA ATPase family. (437 aa)
	W6ZU01_COCMI	Uncharacterized protein. (575 aa)
	W6ZYQ9_COCMI	Uncharacterized protein. (223 aa)
	W7A2U1_COCMI	Uncharacterized protein. (197 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YU68_COCMI	W6YVW5_COCMI	W6YU68	W6YVW5	Uncharacterized protein.	Uncharacterized protein.	0.978
W6YU68_COCMI	W6YWH9_COCMI	W6YU68	W6YWH9	Uncharacterized protein.	Uncharacterized protein.	0.936
W6YU68_COCMI	W6Z264_COCMI	W6YU68	W6Z264	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YU68_COCMI	W6Z2D3_COCMI	W6YU68	W6Z2D3	Uncharacterized protein.	Vacuolar-sorting protein SNF8; Component of the endosomal sorting complex required for transport II (ESCRT-II), which is required for multivesicular body (MVB) formation and sorting of endosomal cargo proteins into MVBs. Belongs to the SNF8 family.	0.962
W6YU68_COCMI	W6Z8W0_COCMI	W6YU68	W6Z8W0	Uncharacterized protein.	Uncharacterized protein.	0.998
W6YU68_COCMI	W6ZFD4_COCMI	W6YU68	W6ZFD4	Uncharacterized protein.	Uncharacterized protein.	0.918
W6YU68_COCMI	W6ZGI0_COCMI	W6YU68	W6ZGI0	Uncharacterized protein.	Uncharacterized protein.	0.978
W6YU68_COCMI	W6ZL07_COCMI	W6YU68	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YU68_COCMI	W6ZL22_COCMI	W6YU68	W6ZL22	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.936
W6YU68_COCMI	W6ZQ69_COCMI	W6YU68	W6ZQ69	Uncharacterized protein.	Vacuolar protein sorting-associated protein 28; Component of the ESCRT-I complex (endosomal sorting complex required for transport I), a regulator of vesicular trafficking process.	0.899
W6YU68_COCMI	W6ZRL2_COCMI	W6YU68	W6ZRL2	Uncharacterized protein.	Uncharacterized protein; Belongs to the AAA ATPase family.	0.997
W6YU68_COCMI	W6ZU01_COCMI	W6YU68	W6ZU01	Uncharacterized protein.	Uncharacterized protein.	0.891
W6YU68_COCMI	W6ZYQ9_COCMI	W6YU68	W6ZYQ9	Uncharacterized protein.	Uncharacterized protein.	0.996
W6YU68_COCMI	W7A2U1_COCMI	W6YU68	W7A2U1	Uncharacterized protein.	Uncharacterized protein.	0.960
W6YVW5_COCMI	W6YU68_COCMI	W6YVW5	W6YU68	Uncharacterized protein.	Uncharacterized protein.	0.978
W6YVW5_COCMI	W6YWH9_COCMI	W6YVW5	W6YWH9	Uncharacterized protein.	Uncharacterized protein.	0.622
W6YVW5_COCMI	W6Z264_COCMI	W6YVW5	W6Z264	Uncharacterized protein.	Uncharacterized protein.	0.934
W6YVW5_COCMI	W6Z8W0_COCMI	W6YVW5	W6Z8W0	Uncharacterized protein.	Uncharacterized protein.	0.954
W6YVW5_COCMI	W6ZFD4_COCMI	W6YVW5	W6ZFD4	Uncharacterized protein.	Uncharacterized protein.	0.974
W6YVW5_COCMI	W6ZGI0_COCMI	W6YVW5	W6ZGI0	Uncharacterized protein.	Uncharacterized protein.	0.944