(9 nodes) Mixed, incl. Zinc-binding ribosomal protein, and rRNA transport network (Bipolaris oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6YXZ6_COCMI	Uncharacterized protein. (290 aa)
	W6Z256_COCMI	Uncharacterized protein. (58 aa)
	W6Z9F5_COCMI	Uncharacterized protein. (122 aa)
	W6ZBN8_COCMI	Ribosomal_L23eN domain-containing protein. (153 aa)
	W6ZF12_COCMI	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (110 aa)
	W6ZFZ3_COCMI	KOW domain-containing protein. (135 aa)
	W6ZPF7_COCMI	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family. (265 aa)
	W6ZSC2_COCMI	Uncharacterized protein. (496 aa)
	W6ZT83_COCMI	Uncharacterized protein. (178 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YXZ6_COCMI	W6Z256_COCMI	W6YXZ6	W6Z256	Uncharacterized protein.	Uncharacterized protein.	0.999
W6YXZ6_COCMI	W6Z9F5_COCMI	W6YXZ6	W6Z9F5	Uncharacterized protein.	Uncharacterized protein.	0.999
W6YXZ6_COCMI	W6ZBN8_COCMI	W6YXZ6	W6ZBN8	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein.	0.999
W6YXZ6_COCMI	W6ZF12_COCMI	W6YXZ6	W6ZF12	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
W6YXZ6_COCMI	W6ZFZ3_COCMI	W6YXZ6	W6ZFZ3	Uncharacterized protein.	KOW domain-containing protein.	0.999
W6YXZ6_COCMI	W6ZPF7_COCMI	W6YXZ6	W6ZPF7	Uncharacterized protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
W6YXZ6_COCMI	W6ZSC2_COCMI	W6YXZ6	W6ZSC2	Uncharacterized protein.	Uncharacterized protein.	0.999
W6YXZ6_COCMI	W6ZT83_COCMI	W6YXZ6	W6ZT83	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Z256_COCMI	W6YXZ6_COCMI	W6Z256	W6YXZ6	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Z256_COCMI	W6Z9F5_COCMI	W6Z256	W6Z9F5	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Z256_COCMI	W6ZBN8_COCMI	W6Z256	W6ZBN8	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein.	0.999
W6Z256_COCMI	W6ZF12_COCMI	W6Z256	W6ZF12	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
W6Z256_COCMI	W6ZFZ3_COCMI	W6Z256	W6ZFZ3	Uncharacterized protein.	KOW domain-containing protein.	0.999
W6Z256_COCMI	W6ZPF7_COCMI	W6Z256	W6ZPF7	Uncharacterized protein.	KH type-2 domain-containing protein; Belongs to the universal ribosomal protein uS3 family.	0.999
W6Z256_COCMI	W6ZSC2_COCMI	W6Z256	W6ZSC2	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Z256_COCMI	W6ZT83_COCMI	W6Z256	W6ZT83	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Z9F5_COCMI	W6YXZ6_COCMI	W6Z9F5	W6YXZ6	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Z9F5_COCMI	W6Z256_COCMI	W6Z9F5	W6Z256	Uncharacterized protein.	Uncharacterized protein.	0.999
W6Z9F5_COCMI	W6ZBN8_COCMI	W6Z9F5	W6ZBN8	Uncharacterized protein.	Ribosomal_L23eN domain-containing protein.	0.999
W6Z9F5_COCMI	W6ZF12_COCMI	W6Z9F5	W6ZF12	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999