43 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6ZJA3_COCMI	Uncharacterized protein. (197 aa)
	W6ZJU8_COCMI	Uncharacterized protein. (127 aa)
	W6ZL07_COCMI	Uncharacterized protein. (523 aa)
	W6ZL22_COCMI	GLUE N-terminal domain-containing protein. (594 aa)
	W6ZL66_COCMI	t-SNARE coiled-coil homology domain-containing protein. (226 aa)
	W7A2U1_COCMI	Uncharacterized protein. (197 aa)
	W7A0X3_COCMI	Uncharacterized protein. (663 aa)
	W7A027_COCMI	Uncharacterized protein. (974 aa)
	W6ZYQ9_COCMI	Uncharacterized protein. (223 aa)
	W6ZXH3_COCMI	Uncharacterized protein. (132 aa)
	W6ZQ39_COCMI	Lipase_3 domain-containing protein. (566 aa)
	W6ZLY3_COCMI	Uncharacterized protein. (227 aa)
	W6ZLP3_COCMI	Vps8 domain-containing protein. (1603 aa)
	W6YN28_COCMI	Uncharacterized protein. (486 aa)
	W6YNS2_COCMI	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (693 aa)
	W6YR74_COCMI	Uncharacterized protein. (396 aa)
	W6YRQ1_COCMI	Uncharacterized protein. (383 aa)
	W6YVE9_COCMI	Lipase_3 domain-containing protein. (402 aa)
	W6YW02_COCMI	Uncharacterized protein. (205 aa)
	W6YW74_COCMI	Uncharacterized protein. (344 aa)
	W6YYB5_COCMI	Uncharacterized protein. (186 aa)
	W6YZU4_COCMI	Uncharacterized protein. (221 aa)
	W6Z4S1_COCMI	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (880 aa)
	W6Z5B2_COCMI	Uncharacterized protein. (885 aa)
	W6Z7H4_COCMI	Sld7_C domain-containing protein. (496 aa)
	W6Z7K4_COCMI	DAO domain-containing protein. (400 aa)
	W6Z7X8_COCMI	MARVEL domain-containing protein. (180 aa)
	W6Z8N0_COCMI	DAO domain-containing protein. (406 aa)
	W6Z8W0_COCMI	Uncharacterized protein. (227 aa)
	W6Z986_COCMI	GAR domain-containing protein. (947 aa)
	W6ZBC9_COCMI	Sodium/hydrogen exchanger; Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family. (653 aa)
	W6ZBZ5_COCMI	Uncharacterized protein. (440 aa)
	W6ZCK2_COCMI	Uncharacterized protein. (1390 aa)
	W6ZEW4_COCMI	DAO domain-containing protein. (427 aa)
	W6ZFD4_COCMI	Uncharacterized protein. (422 aa)
	W6ZFT3_COCMI	Uncharacterized protein. (1325 aa)
	W6ZFV8_COCMI	Uncharacterized protein. (1532 aa)
	W6ZGI0_COCMI	Uncharacterized protein. (214 aa)
	W6ZH10_COCMI	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1303 aa)
	W6ZHA7_COCMI	RING-type domain-containing protein. (614 aa)
	W6ZHL1_COCMI	Uncharacterized protein. (243 aa)
	COCMIDRAFT_988	Lipase_3 domain-containing protein. (634 aa)
	W7A442_COCMI	Uncharacterized protein. (592 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCMIDRAFT_988	W6YW02_COCMI	W6ZJP6	W6YW02	Lipase_3 domain-containing protein.	Uncharacterized protein.	0.958
COCMIDRAFT_988	W6ZQ39_COCMI	W6ZJP6	W6ZQ39	Lipase_3 domain-containing protein.	Lipase_3 domain-containing protein.	0.904
COCMIDRAFT_988	W7A0X3_COCMI	W6ZJP6	W7A0X3	Lipase_3 domain-containing protein.	Uncharacterized protein.	0.567
W6YRQ1_COCMI	W6ZL66_COCMI	W6YRQ1	W6ZL66	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.809
W6YW02_COCMI	COCMIDRAFT_988	W6YW02	W6ZJP6	Uncharacterized protein.	Lipase_3 domain-containing protein.	0.958
W6YW02_COCMI	W6YW74_COCMI	W6YW02	W6YW74	Uncharacterized protein.	Uncharacterized protein.	0.675
W6YW02_COCMI	W6YZU4_COCMI	W6YW02	W6YZU4	Uncharacterized protein.	Uncharacterized protein.	0.590
W6YW02_COCMI	W6Z4S1_COCMI	W6YW02	W6Z4S1	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.746
W6YW02_COCMI	W6Z5B2_COCMI	W6YW02	W6Z5B2	Uncharacterized protein.	Uncharacterized protein.	0.944
W6YW02_COCMI	W6ZFT3_COCMI	W6YW02	W6ZFT3	Uncharacterized protein.	Uncharacterized protein.	0.980
W6YW02_COCMI	W6ZHL1_COCMI	W6YW02	W6ZHL1	Uncharacterized protein.	Uncharacterized protein.	0.624
W6YW02_COCMI	W6ZL66_COCMI	W6YW02	W6ZL66	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.849
W6YW02_COCMI	W6ZLP3_COCMI	W6YW02	W6ZLP3	Uncharacterized protein.	Vps8 domain-containing protein.	0.587
W6YW02_COCMI	W6ZQ39_COCMI	W6YW02	W6ZQ39	Uncharacterized protein.	Lipase_3 domain-containing protein.	0.836
W6YW02_COCMI	W7A0X3_COCMI	W6YW02	W7A0X3	Uncharacterized protein.	Uncharacterized protein.	0.952
W6YW74_COCMI	W6YW02_COCMI	W6YW74	W6YW02	Uncharacterized protein.	Uncharacterized protein.	0.675
W6YW74_COCMI	W6ZL66_COCMI	W6YW74	W6ZL66	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.624
W6YYB5_COCMI	W6Z5B2_COCMI	W6YYB5	W6Z5B2	Uncharacterized protein.	Uncharacterized protein.	0.469
W6YYB5_COCMI	W7A0X3_COCMI	W6YYB5	W7A0X3	Uncharacterized protein.	Uncharacterized protein.	0.444
W6YZU4_COCMI	W6YW02_COCMI	W6YZU4	W6YW02	Uncharacterized protein.	Uncharacterized protein.	0.590