15 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6ZH44_COCMI	Uncharacterized protein. (184 aa)
	W6YSR8_COCMI	Uncharacterized protein. (505 aa)
	GET3	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...] (339 aa)
	W6Z1S3_COCMI	J domain-containing protein. (690 aa)
	W6Z407_COCMI	Uncharacterized protein. (274 aa)
	W6Z4F5_COCMI	Uncharacterized protein. (420 aa)
	W6Z4I2_COCMI	Uncharacterized protein; Belongs to the heat shock protein 70 family. (675 aa)
	W6ZCS0_COCMI	Uncharacterized protein. (209 aa)
	W6ZDM7_COCMI	Plug_translocon domain-containing protein. (476 aa)
	W6ZE16_COCMI	Uncharacterized protein. (444 aa)
	W6ZFL7_COCMI	LRRNT_2 domain-containing protein. (306 aa)
	W6ZGC1_COCMI	Uncharacterized protein. (202 aa)
	W6ZI38_COCMI	Uncharacterized protein. (69 aa)
	W6ZGJ1_COCMI	Uncharacterized protein. (182 aa)
	W6ZGT3_COCMI	Uncharacterized protein. (315 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GET3	W6YSR8_COCMI	W6Z0T5	W6YSR8	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	Uncharacterized protein.	0.630
GET3	W6ZDM7_COCMI	W6Z0T5	W6ZDM7	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	Plug_translocon domain-containing protein.	0.666
GET3	W6ZGT3_COCMI	W6Z0T5	W6ZGT3	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	Uncharacterized protein.	0.996
W6YSR8_COCMI	GET3	W6YSR8	W6Z0T5	Uncharacterized protein.	ATPase GET3; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. S [...]	0.630
W6YSR8_COCMI	W6Z1S3_COCMI	W6YSR8	W6Z1S3	Uncharacterized protein.	J domain-containing protein.	0.942
W6YSR8_COCMI	W6Z407_COCMI	W6YSR8	W6Z407	Uncharacterized protein.	Uncharacterized protein.	0.675
W6YSR8_COCMI	W6Z4F5_COCMI	W6YSR8	W6Z4F5	Uncharacterized protein.	Uncharacterized protein.	0.942
W6YSR8_COCMI	W6Z4I2_COCMI	W6YSR8	W6Z4I2	Uncharacterized protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.542
W6YSR8_COCMI	W6ZCS0_COCMI	W6YSR8	W6ZCS0	Uncharacterized protein.	Uncharacterized protein.	0.896
W6YSR8_COCMI	W6ZDM7_COCMI	W6YSR8	W6ZDM7	Uncharacterized protein.	Plug_translocon domain-containing protein.	0.997
W6YSR8_COCMI	W6ZFL7_COCMI	W6YSR8	W6ZFL7	Uncharacterized protein.	LRRNT_2 domain-containing protein.	0.675
W6YSR8_COCMI	W6ZGC1_COCMI	W6YSR8	W6ZGC1	Uncharacterized protein.	Uncharacterized protein.	0.675
W6YSR8_COCMI	W6ZGT3_COCMI	W6YSR8	W6ZGT3	Uncharacterized protein.	Uncharacterized protein.	0.519
W6YSR8_COCMI	W6ZI38_COCMI	W6YSR8	W6ZI38	Uncharacterized protein.	Uncharacterized protein.	0.997
W6Z1S3_COCMI	W6YSR8_COCMI	W6Z1S3	W6YSR8	J domain-containing protein.	Uncharacterized protein.	0.942
W6Z1S3_COCMI	W6Z407_COCMI	W6Z1S3	W6Z407	J domain-containing protein.	Uncharacterized protein.	0.898
W6Z1S3_COCMI	W6Z4F5_COCMI	W6Z1S3	W6Z4F5	J domain-containing protein.	Uncharacterized protein.	0.997
W6Z1S3_COCMI	W6Z4I2_COCMI	W6Z1S3	W6Z4I2	J domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.905
W6Z1S3_COCMI	W6ZCS0_COCMI	W6Z1S3	W6ZCS0	J domain-containing protein.	Uncharacterized protein.	0.996
W6Z1S3_COCMI	W6ZDM7_COCMI	W6Z1S3	W6ZDM7	J domain-containing protein.	Plug_translocon domain-containing protein.	0.983