13 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6YZ06_COCMI	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family. (1799 aa)
	W6ZIN9_COCMI	Uncharacterized protein. (1024 aa)
	W6ZJP4_COCMI	Uncharacterized protein. (805 aa)
	W6ZL07_COCMI	Uncharacterized protein. (523 aa)
	W6ZWR2_COCMI	WD_REPEATS_REGION domain-containing protein. (1247 aa)
	W6ZGI0_COCMI	Uncharacterized protein. (214 aa)
	W6ZF21_COCMI	Arf-GAP domain-containing protein. (471 aa)
	W6ZDC9_COCMI	Uncharacterized protein. (987 aa)
	W6Z514_COCMI	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (775 aa)
	W6Z3P2_COCMI	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (298 aa)
	W6Z264_COCMI	Uncharacterized protein. (213 aa)
	W6ZHH0_COCMI	Uncharacterized protein. (351 aa)
	W6YU68_COCMI	Uncharacterized protein. (225 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YU68_COCMI	W6Z264_COCMI	W6YU68	W6Z264	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YU68_COCMI	W6ZGI0_COCMI	W6YU68	W6ZGI0	Uncharacterized protein.	Uncharacterized protein.	0.978
W6YU68_COCMI	W6ZL07_COCMI	W6YU68	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YZ06_COCMI	W6Z3P2_COCMI	W6YZ06	W6Z3P2	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.997
W6YZ06_COCMI	W6Z514_COCMI	W6YZ06	W6Z514	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.966
W6YZ06_COCMI	W6ZDC9_COCMI	W6YZ06	W6ZDC9	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	Uncharacterized protein.	0.927
W6YZ06_COCMI	W6ZIN9_COCMI	W6YZ06	W6ZIN9	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	Uncharacterized protein.	0.927
W6YZ06_COCMI	W6ZJP4_COCMI	W6YZ06	W6ZJP4	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	Uncharacterized protein.	0.927
W6YZ06_COCMI	W6ZWR2_COCMI	W6YZ06	W6ZWR2	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	WD_REPEATS_REGION domain-containing protein.	0.910
W6Z264_COCMI	W6YU68_COCMI	W6Z264	W6YU68	Uncharacterized protein.	Uncharacterized protein.	0.994
W6Z264_COCMI	W6ZGI0_COCMI	W6Z264	W6ZGI0	Uncharacterized protein.	Uncharacterized protein.	0.863
W6Z264_COCMI	W6ZL07_COCMI	W6Z264	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.958
W6Z3P2_COCMI	W6YZ06_COCMI	W6Z3P2	W6YZ06	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.997
W6Z3P2_COCMI	W6Z514_COCMI	W6Z3P2	W6Z514	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.999
W6Z3P2_COCMI	W6ZDC9_COCMI	W6Z3P2	W6ZDC9	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.887
W6Z3P2_COCMI	W6ZIN9_COCMI	W6Z3P2	W6ZIN9	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.998
W6Z3P2_COCMI	W6ZJP4_COCMI	W6Z3P2	W6ZJP4	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.887
W6Z3P2_COCMI	W6ZWR2_COCMI	W6Z3P2	W6ZWR2	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	WD_REPEATS_REGION domain-containing protein.	0.999
W6Z514_COCMI	W6YZ06_COCMI	W6Z514	W6YZ06	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.	0.966
W6Z514_COCMI	W6Z3P2_COCMI	W6Z514	W6Z3P2	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.999