17 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6ZHH0_COCMI	Uncharacterized protein. (351 aa)
	W6Z780_COCMI	Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family. (3197 aa)
	W6Z5L0_COCMI	Uncharacterized protein. (963 aa)
	W6Z4S1_COCMI	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting. (880 aa)
	W6Z2F4_COCMI	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations. (130 aa)
	W6YXP2_COCMI	Uncharacterized protein. (495 aa)
	W6YWM7_COCMI	Uncharacterized protein. (247 aa)
	W6ZCD3_COCMI	Uncharacterized protein. (381 aa)
	W6YWE9_COCMI	GOLD domain-containing protein. (203 aa)
	W6YU26_COCMI	Uncharacterized protein. (358 aa)
	W6YRC0_COCMI	PH domain-containing protein. (1888 aa)
	W6YNS2_COCMI	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (693 aa)
	W6ZDJ3_COCMI	PX domain-containing protein. (592 aa)
	W6ZAX3_COCMI	ER lumen protein-retaining receptor. (217 aa)
	W6ZDX0_COCMI	Uncharacterized protein. (328 aa)
	W6ZGW0_COCMI	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment. (188 aa)
	W6ZYQ9_COCMI	Uncharacterized protein. (223 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YNS2_COCMI	W6YRC0_COCMI	W6YNS2	W6YRC0	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	PH domain-containing protein.	0.414
W6YNS2_COCMI	W6ZDJ3_COCMI	W6YNS2	W6ZDJ3	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	PX domain-containing protein.	0.590
W6YRC0_COCMI	W6YNS2_COCMI	W6YRC0	W6YNS2	PH domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.414
W6YU26_COCMI	W6YWE9_COCMI	W6YU26	W6YWE9	Uncharacterized protein.	GOLD domain-containing protein.	0.683
W6YU26_COCMI	W6ZGW0_COCMI	W6YU26	W6ZGW0	Uncharacterized protein.	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	0.485
W6YWE9_COCMI	W6YU26_COCMI	W6YWE9	W6YU26	GOLD domain-containing protein.	Uncharacterized protein.	0.683
W6YWE9_COCMI	W6ZAX3_COCMI	W6YWE9	W6ZAX3	GOLD domain-containing protein.	ER lumen protein-retaining receptor.	0.737
W6YWE9_COCMI	W6ZGW0_COCMI	W6YWE9	W6ZGW0	GOLD domain-containing protein.	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	0.517
W6YXP2_COCMI	W6Z4S1_COCMI	W6YXP2	W6Z4S1	Uncharacterized protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.408
W6Z2F4_COCMI	W6ZDX0_COCMI	W6Z2F4	W6ZDX0	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	Uncharacterized protein.	0.661
W6Z4S1_COCMI	W6YXP2_COCMI	W6Z4S1	W6YXP2	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.408
W6Z4S1_COCMI	W6Z780_COCMI	W6Z4S1	W6Z780	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family.	0.635
W6Z4S1_COCMI	W6ZDJ3_COCMI	W6Z4S1	W6ZDJ3	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	PX domain-containing protein.	0.988
W6Z4S1_COCMI	W6ZYQ9_COCMI	W6Z4S1	W6ZYQ9	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	Uncharacterized protein.	0.444
W6Z780_COCMI	W6Z4S1_COCMI	W6Z780	W6Z4S1	Vacuolar protein sorting-associated protein; May be involved in recycling of membrane proteins between an endocytic compartment and the TGN; Belongs to the VPS13 family.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.635
W6ZAX3_COCMI	W6YWE9_COCMI	W6ZAX3	W6YWE9	ER lumen protein-retaining receptor.	GOLD domain-containing protein.	0.737
W6ZAX3_COCMI	W6ZGW0_COCMI	W6ZAX3	W6ZGW0	ER lumen protein-retaining receptor.	Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.	0.654
W6ZDJ3_COCMI	W6YNS2_COCMI	W6ZDJ3	W6YNS2	PX domain-containing protein.	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.590
W6ZDJ3_COCMI	W6Z4S1_COCMI	W6ZDJ3	W6Z4S1	PX domain-containing protein.	Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.	0.988
W6ZDX0_COCMI	W6Z2F4_COCMI	W6ZDX0	W6Z2F4	Uncharacterized protein.	Profilin; Binds to actin and affects the structure of the cytoskeleton. At high concentrations, profilin prevents the polymerization of actin, whereas it enhances it at low concentrations.	0.661