22 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6Z0Q6_COCMI	Uncharacterized protein. (225 aa)
	W6YYI7_COCMI	Uncharacterized protein. (941 aa)
	W6YPG0_COCMI	Uncharacterized protein. (771 aa)
	COCMIDRAFT_86	KxDL domain-containing protein. (188 aa)
	W6ZUC7_COCMI	SH3 domain-containing protein. (848 aa)
	W6ZRE6_COCMI	AIP3 domain-containing protein. (1007 aa)
	W6ZM08_COCMI	UBIQUITIN_CONJUGAT_2 domain-containing protein. (303 aa)
	W6ZJ41_COCMI	Uncharacterized protein. (695 aa)
	W6ZIW8_COCMI	Protein kinase domain-containing protein. (627 aa)
	W6ZIA5_COCMI	Uncharacterized protein. (1008 aa)
	W6ZDZ5_COCMI	Protein kinase domain-containing protein. (390 aa)
	W6ZC41_COCMI	TPR_REGION domain-containing protein. (428 aa)
	W6ZB99_COCMI	WAPL domain-containing protein. (1110 aa)
	W6ZAK5_COCMI	E3 ubiquitin-protein ligase. (820 aa)
	W6Z9U4_COCMI	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (189 aa)
	W6Z5D4_COCMI	AMP-binding domain-containing protein. (709 aa)
	W6Z3P2_COCMI	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (298 aa)
	W6Z3N6_COCMI	Uncharacterized protein. (625 aa)
	W6Z3K5_COCMI	CAAX prenyl protease; Proteolytically removes the C-terminal three residues of farnesylated proteins; Belongs to the peptidase M48A family. (461 aa)
	W6Z333_COCMI	Uncharacterized protein. (345 aa)
	W6Z242_COCMI	Uncharacterized protein. (335 aa)
	W6YYT8_COCMI	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (398 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YPG0_COCMI	W6Z3P2_COCMI	W6YPG0	W6Z3P2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.803
W6YPG0_COCMI	W6ZB99_COCMI	W6YPG0	W6ZB99	Uncharacterized protein.	WAPL domain-containing protein.	0.407
W6Z3P2_COCMI	W6YPG0_COCMI	W6Z3P2	W6YPG0	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein.	0.803
W6Z3P2_COCMI	W6Z9U4_COCMI	W6Z3P2	W6Z9U4	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.979
W6Z5D4_COCMI	W6ZJ41_COCMI	W6Z5D4	W6ZJ41	AMP-binding domain-containing protein.	Uncharacterized protein.	0.907
W6Z9U4_COCMI	W6Z3P2_COCMI	W6Z9U4	W6Z3P2	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.979
W6ZB99_COCMI	W6YPG0_COCMI	W6ZB99	W6YPG0	WAPL domain-containing protein.	Uncharacterized protein.	0.407
W6ZJ41_COCMI	W6Z5D4_COCMI	W6ZJ41	W6Z5D4	Uncharacterized protein.	AMP-binding domain-containing protein.	0.907
W6ZRE6_COCMI	W6ZUC7_COCMI	W6ZRE6	W6ZUC7	AIP3 domain-containing protein.	SH3 domain-containing protein.	0.580
W6ZUC7_COCMI	W6ZRE6_COCMI	W6ZUC7	W6ZRE6	SH3 domain-containing protein.	AIP3 domain-containing protein.	0.580