36 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6Z1C3_COCMI	Sec2p domain-containing protein. (712 aa)
	W6YQR3_COCMI	Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family. (72 aa)
	W6YS28_COCMI	FYVE-type domain-containing protein. (659 aa)
	W6YTI7_COCMI	Uncharacterized protein. (60 aa)
	W6YVH7_COCMI	Sec8_exocyst domain-containing protein. (1014 aa)
	W6YWP9_COCMI	Methyltranfer_dom domain-containing protein. (357 aa)
	W6YXV3_COCMI	Uncharacterized protein. (1087 aa)
	W6YYQ5_COCMI	Exocyst complex component SEC15; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. (771 aa)
	W6YYV6_COCMI	Uncharacterized protein. (1437 aa)
	W6Z055_COCMI	Sec3-PIP2_bind domain-containing protein. (1579 aa)
	W6Z1M0_COCMI	Uncharacterized protein; Belongs to the OSBP family. (1621 aa)
	W6Z3D0_COCMI	Sec2p domain-containing protein. (261 aa)
	W6Z454_COCMI	F-box domain-containing protein. (910 aa)
	W6Z641_COCMI	Uncharacterized protein. (225 aa)
	W6Z6J5_COCMI	Uncharacterized protein. (318 aa)
	W6Z7B2_COCMI	PH domain-containing protein. (1000 aa)
	W6Z7J7_COCMI	t-SNARE coiled-coil homology domain-containing protein. (424 aa)
	W6Z8D2_COCMI	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family. (1060 aa)
	W6ZBI4_COCMI	Uncharacterized protein. (356 aa)
	W6ZBL0_COCMI	Rab-GAP TBC domain-containing protein. (1092 aa)
	W6ZCT2_COCMI	Pep3_Vps18 domain-containing protein. (969 aa)
	W6ZD45_COCMI	Coatomer subunit gamma; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (917 aa)
	W6ZDL8_COCMI	E3 ubiquitin-protein ligase PEP5. (977 aa)
	W6ZDZ2_COCMI	Uncharacterized protein. (211 aa)
	W6ZFM6_COCMI	Uncharacterized protein. (135 aa)
	W6ZFP4_COCMI	C2 domain-containing protein. (489 aa)
	W6ZFU6_COCMI	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family. (625 aa)
	W6ZFY3_COCMI	Golgi apparatus membrane protein TVP23; Golgi membrane protein involved in vesicular trafficking. Belongs to the TVP23 family. (197 aa)
	W6ZFZ9_COCMI	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (714 aa)
	W6ZKH9_COCMI	Exo84_C domain-containing protein. (679 aa)
	W6ZKQ3_COCMI	Uncharacterized protein. (202 aa)
	W6ZLB2_COCMI	Uncharacterized protein. (842 aa)
	W6ZLK5_COCMI	Uncharacterized protein; Belongs to the OSBP family. (576 aa)
	W6ZS86_COCMI	Uncharacterized protein. (763 aa)
	W6ZUS5_COCMI	Uncharacterized protein. (1261 aa)
	W7A516_COCMI	t-SNARE coiled-coil homology domain-containing protein. (369 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YS28_COCMI	W6ZCT2_COCMI	W6YS28	W6ZCT2	FYVE-type domain-containing protein.	Pep3_Vps18 domain-containing protein.	0.648
W6YS28_COCMI	W6ZDL8_COCMI	W6YS28	W6ZDL8	FYVE-type domain-containing protein.	E3 ubiquitin-protein ligase PEP5.	0.661
W6YS28_COCMI	W6ZDZ2_COCMI	W6YS28	W6ZDZ2	FYVE-type domain-containing protein.	Uncharacterized protein.	0.483
W6YS28_COCMI	W6ZFZ9_COCMI	W6YS28	W6ZFZ9	FYVE-type domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.452
W6YVH7_COCMI	W6YYQ5_COCMI	W6YVH7	W6YYQ5	Sec8_exocyst domain-containing protein.	Exocyst complex component SEC15; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	0.999
W6YVH7_COCMI	W6Z055_COCMI	W6YVH7	W6Z055	Sec8_exocyst domain-containing protein.	Sec3-PIP2_bind domain-containing protein.	0.812
W6YVH7_COCMI	W6Z1C3_COCMI	W6YVH7	W6Z1C3	Sec8_exocyst domain-containing protein.	Sec2p domain-containing protein.	0.800
W6YVH7_COCMI	W6Z3D0_COCMI	W6YVH7	W6Z3D0	Sec8_exocyst domain-containing protein.	Sec2p domain-containing protein.	0.701
W6YVH7_COCMI	W6Z454_COCMI	W6YVH7	W6Z454	Sec8_exocyst domain-containing protein.	F-box domain-containing protein.	0.953
W6YVH7_COCMI	W6Z7J7_COCMI	W6YVH7	W6Z7J7	Sec8_exocyst domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.823
W6YVH7_COCMI	W6Z8D2_COCMI	W6YVH7	W6Z8D2	Sec8_exocyst domain-containing protein.	Exocyst complex component SEC5; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.	0.999
W6YVH7_COCMI	W6ZDZ2_COCMI	W6YVH7	W6ZDZ2	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.859
W6YVH7_COCMI	W6ZFU6_COCMI	W6YVH7	W6ZFU6	Sec8_exocyst domain-containing protein.	Exocyst complex protein EXO70; Involved in the secretory pathway as part of the exocyst complex which tethers secretory vesicles to the sites of exocytosis. Also plays a role in the assembly of the exocyst. Belongs to the EXO70 family.	0.999
W6YVH7_COCMI	W6ZFZ9_COCMI	W6YVH7	W6ZFZ9	Sec8_exocyst domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.709
W6YVH7_COCMI	W6ZKH9_COCMI	W6YVH7	W6ZKH9	Sec8_exocyst domain-containing protein.	Exo84_C domain-containing protein.	0.999
W6YVH7_COCMI	W6ZLB2_COCMI	W6YVH7	W6ZLB2	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.999
W6YVH7_COCMI	W6ZS86_COCMI	W6YVH7	W6ZS86	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.999
W6YVH7_COCMI	W6ZUS5_COCMI	W6YVH7	W6ZUS5	Sec8_exocyst domain-containing protein.	Uncharacterized protein.	0.482
W6YYQ5_COCMI	W6YVH7_COCMI	W6YYQ5	W6YVH7	Exocyst complex component SEC15; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Sec8_exocyst domain-containing protein.	0.999
W6YYQ5_COCMI	W6Z055_COCMI	W6YYQ5	W6Z055	Exocyst complex component SEC15; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane.	Sec3-PIP2_bind domain-containing protein.	0.730