55 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6Z2P4_COCMI	Matrin-type domain-containing protein. (235 aa)
	W6Z371_COCMI	Sm domain-containing protein. (136 aa)
	W6YZR2_COCMI	Suf domain-containing protein. (564 aa)
	W6Z3Q2_COCMI	Nop domain-containing protein. (547 aa)
	W6Z444_COCMI	Sm domain-containing protein. (93 aa)
	W6Z5N6_COCMI	Sm domain-containing protein. (82 aa)
	W6Z7W3_COCMI	Uncharacterized protein. (262 aa)
	W6Z8M6_COCMI	PSP domain-containing protein. (569 aa)
	W6Z990_COCMI	GYF domain-containing protein. (443 aa)
	W6Z9X8_COCMI	Uncharacterized protein. (582 aa)
	W6ZAT9_COCMI	Uncharacterized protein. (520 aa)
	W6ZBC3_COCMI	RRM domain-containing protein. (204 aa)
	W6ZBL6_COCMI	Uncharacterized protein. (706 aa)
	W6ZCP4_COCMI	zf-C2H2_jaz domain-containing protein. (214 aa)
	W6ZDB4_COCMI	TPR_REGION domain-containing protein. (930 aa)
	LSM8	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
	W6ZED8_COCMI	Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (130 aa)
	W6ZEF1_COCMI	Uncharacterized protein. (678 aa)
	W6ZFU2_COCMI	Uncharacterized protein. (1274 aa)
	W6ZG81_COCMI	Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)
	W6ZGG3_COCMI	Uncharacterized protein. (512 aa)
	W6ZGI6_COCMI	Uncharacterized protein. (331 aa)
	W6ZGN9_COCMI	Uncharacterized protein. (149 aa)
	W6ZHQ1_COCMI	CPSF_A domain-containing protein. (1235 aa)
	W6ZI46_COCMI	RRM domain-containing protein. (322 aa)
	W6ZIM6_COCMI	RRM domain-containing protein. (127 aa)
	W6ZLG0_COCMI	Uncharacterized protein. (244 aa)
	COCMIDRAFT_523	SF3b1 domain-containing protein. (1187 aa)
	W6ZMT3_COCMI	Uncharacterized protein. (108 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (96 aa)
	W6ZNX3_COCMI	Matrin-type domain-containing protein. (57 aa)
	W6ZP49_COCMI	MPN domain-containing protein. (2328 aa)
	W6ZQ99_COCMI	Uncharacterized protein. (474 aa)
	W6ZRI8_COCMI	Uncharacterized protein. (263 aa)
	W6ZT49_COCMI	Uncharacterized protein. (244 aa)
	W6ZV09_COCMI	WD_REPEATS_REGION domain-containing protein. (515 aa)
	W6ZXM6_COCMI	Uncharacterized protein. (723 aa)
	W6ZYS5_COCMI	Small nuclear ribonucleoprotein Sm D2. (117 aa)
	W6ZYT0_COCMI	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	W7A2F0_COCMI	Uncharacterized protein. (776 aa)
	W7A3Y3_COCMI	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	COCMIDRAFT_506	Uncharacterized protein. (918 aa)
	W6YZG1_COCMI	RRM domain-containing protein. (178 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (86 aa)
	W6YZ82_COCMI	RRM domain-containing protein. (178 aa)
	W6YYM8_COCMI	Uncharacterized protein. (2213 aa)
	W6YYM3_COCMI	Small nuclear ribonucleoprotein G. (84 aa)
	W6YYL9_COCMI	Tr-type G domain-containing protein. (993 aa)
	W6YY62_COCMI	Uncharacterized protein. (292 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (140 aa)
	W6YWW5_COCMI	Sm domain-containing protein. (94 aa)
	W6YUI6_COCMI	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (94 aa)
	W6YTJ1_COCMI	Uncharacterized protein. (1673 aa)
	W6YMH5_COCMI	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (143 aa)
	W6Z1Y9_COCMI	Sm domain-containing protein. (89 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCMIDRAFT_506	COCMIDRAFT_523	W7A4C1	W6ZLX9	Uncharacterized protein.	SF3b1 domain-containing protein.	0.789
COCMIDRAFT_506	LSM3	W7A4C1	W6ZMW6	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.974
COCMIDRAFT_506	LSM4	W7A4C1	W6YX91	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.965
COCMIDRAFT_506	LSM5	W7A4C1	W6YZD2	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.968
COCMIDRAFT_506	LSM8	W7A4C1	W6ZDY8	Uncharacterized protein.	U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.964
COCMIDRAFT_506	W6YMH5_COCMI	W7A4C1	W6YMH5	Uncharacterized protein.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.812
COCMIDRAFT_506	W6YUI6_COCMI	W7A4C1	W6YUI6	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.945
COCMIDRAFT_506	W6YYL9_COCMI	W7A4C1	W6YYL9	Uncharacterized protein.	Tr-type G domain-containing protein.	0.844
COCMIDRAFT_506	W6YYM3_COCMI	W7A4C1	W6YYM3	Uncharacterized protein.	Small nuclear ribonucleoprotein G.	0.926
COCMIDRAFT_506	W6YYM8_COCMI	W7A4C1	W6YYM8	Uncharacterized protein.	Uncharacterized protein.	0.836
COCMIDRAFT_506	W6YZG1_COCMI	W7A4C1	W6YZG1	Uncharacterized protein.	RRM domain-containing protein.	0.625
COCMIDRAFT_506	W6Z1Y9_COCMI	W7A4C1	W6Z1Y9	Uncharacterized protein.	Sm domain-containing protein.	0.973
COCMIDRAFT_506	W6Z2P4_COCMI	W7A4C1	W6Z2P4	Uncharacterized protein.	Matrin-type domain-containing protein.	0.814
COCMIDRAFT_506	W6Z371_COCMI	W7A4C1	W6Z371	Uncharacterized protein.	Sm domain-containing protein.	0.970
COCMIDRAFT_506	W6Z3Q2_COCMI	W7A4C1	W6Z3Q2	Uncharacterized protein.	Nop domain-containing protein.	0.878
COCMIDRAFT_506	W6Z444_COCMI	W7A4C1	W6Z444	Uncharacterized protein.	Sm domain-containing protein.	0.964
COCMIDRAFT_506	W6Z5N6_COCMI	W7A4C1	W6Z5N6	Uncharacterized protein.	Sm domain-containing protein.	0.890
COCMIDRAFT_506	W6Z7W3_COCMI	W7A4C1	W6Z7W3	Uncharacterized protein.	Uncharacterized protein.	0.745
COCMIDRAFT_506	W6Z8M6_COCMI	W7A4C1	W6Z8M6	Uncharacterized protein.	PSP domain-containing protein.	0.792
COCMIDRAFT_506	W6ZAT9_COCMI	W7A4C1	W6ZAT9	Uncharacterized protein.	Uncharacterized protein.	0.778