34 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6ZGA9_COCMI	Uncharacterized protein. (149 aa)
	COCMIDRAFT_21	Uncharacterized protein. (2628 aa)
	W7A2U1_COCMI	Uncharacterized protein. (197 aa)
	W7A0X3_COCMI	Uncharacterized protein. (663 aa)
	W6ZYQ9_COCMI	Uncharacterized protein. (223 aa)
	W6ZXH3_COCMI	Uncharacterized protein. (132 aa)
	W6ZQ39_COCMI	Lipase_3 domain-containing protein. (566 aa)
	W6ZLY3_COCMI	Uncharacterized protein. (227 aa)
	W6ZL66_COCMI	t-SNARE coiled-coil homology domain-containing protein. (226 aa)
	W6ZL22_COCMI	GLUE N-terminal domain-containing protein. (594 aa)
	W6ZL07_COCMI	Uncharacterized protein. (523 aa)
	W6ZL00_COCMI	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A. (1485 aa)
	COCMIDRAFT_988	Lipase_3 domain-containing protein. (634 aa)
	W6ZIZ5_COCMI	Uncharacterized protein. (301 aa)
	W6ZIU0_COCMI	Arrestin_C domain-containing protein. (794 aa)
	W6ZHL1_COCMI	Uncharacterized protein. (243 aa)
	URM1	Ubiquitin-related modifier 1; Acts as a sulfur carrier required for 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of cytosolic tRNA(Lys), tRNA(Glu) and tRNA(Gln). Serves as sulfur donor in tRNA 2-thiolation reaction by being thiocarboxylated (-COSH) at its C-terminus by the MOCS3 homolog UBA4. The sulfur is then transferred to tRNA to form 2-thiolation of mcm(5)S(2)U. Prior mcm(5) tRNA modification by the elongator complex is required for 2-thiolation. Also acts as a ubiquitin-like protein (UBL) that is covalently conjugated via an isopeptide bond to lysine residues of target pr [...] (107 aa)
	W6ZGI0_COCMI	Uncharacterized protein. (214 aa)
	W6ZFE7_COCMI	Uncharacterized protein; Belongs to the synaptobrevin family. (245 aa)
	W6ZBZ5_COCMI	Uncharacterized protein. (440 aa)
	W6Z8W0_COCMI	Uncharacterized protein. (227 aa)
	W6Z8N0_COCMI	DAO domain-containing protein. (406 aa)
	W6Z5B2_COCMI	Uncharacterized protein. (885 aa)
	W6Z590_COCMI	Uncharacterized protein. (605 aa)
	W6Z4J8_COCMI	Uncharacterized protein. (886 aa)
	W6Z4E5_COCMI	Protein transport protein BOS1; SNARE required for protein transport between the ER and the Golgi complex. (252 aa)
	W6Z264_COCMI	Uncharacterized protein. (213 aa)
	W6Z1B9_COCMI	Uncharacterized protein. (354 aa)
	W6YZJ5_COCMI	Uncharacterized protein. (514 aa)
	W6YW74_COCMI	Uncharacterized protein. (344 aa)
	W6YVE9_COCMI	Lipase_3 domain-containing protein. (402 aa)
	W6YUL4_COCMI	Uncharacterized protein. (601 aa)
	W6YU68_COCMI	Uncharacterized protein. (225 aa)
	W6YNS2_COCMI	Uncharacterized protein; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (693 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCMIDRAFT_988	W6ZQ39_COCMI	W6ZJP6	W6ZQ39	Lipase_3 domain-containing protein.	Lipase_3 domain-containing protein.	0.904
COCMIDRAFT_988	W7A0X3_COCMI	W6ZJP6	W7A0X3	Lipase_3 domain-containing protein.	Uncharacterized protein.	0.567
W6YU68_COCMI	W6Z264_COCMI	W6YU68	W6Z264	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YU68_COCMI	W6Z8W0_COCMI	W6YU68	W6Z8W0	Uncharacterized protein.	Uncharacterized protein.	0.998
W6YU68_COCMI	W6ZGI0_COCMI	W6YU68	W6ZGI0	Uncharacterized protein.	Uncharacterized protein.	0.978
W6YU68_COCMI	W6ZL07_COCMI	W6YU68	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.994
W6YU68_COCMI	W6ZL22_COCMI	W6YU68	W6ZL22	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.936
W6YU68_COCMI	W6ZYQ9_COCMI	W6YU68	W6ZYQ9	Uncharacterized protein.	Uncharacterized protein.	0.996
W6YU68_COCMI	W7A2U1_COCMI	W6YU68	W7A2U1	Uncharacterized protein.	Uncharacterized protein.	0.960
W6YUL4_COCMI	W6Z590_COCMI	W6YUL4	W6Z590	Uncharacterized protein.	Uncharacterized protein.	0.902
W6YW74_COCMI	W6ZFE7_COCMI	W6YW74	W6ZFE7	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.586
W6YW74_COCMI	W6ZL00_COCMI	W6YW74	W6ZL00	Uncharacterized protein.	Sortilin; Functions as a sorting receptor in the Golgi compartment required for the intracellular sorting and delivery of soluble vacuolar proteins, like carboxypeptidase Y (CPY) and proteinase A.	0.775
W6YW74_COCMI	W6ZL66_COCMI	W6YW74	W6ZL66	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.624
W6Z264_COCMI	W6YU68_COCMI	W6Z264	W6YU68	Uncharacterized protein.	Uncharacterized protein.	0.994
W6Z264_COCMI	W6Z8W0_COCMI	W6Z264	W6Z8W0	Uncharacterized protein.	Uncharacterized protein.	0.982
W6Z264_COCMI	W6ZGI0_COCMI	W6Z264	W6ZGI0	Uncharacterized protein.	Uncharacterized protein.	0.863
W6Z264_COCMI	W6ZL07_COCMI	W6Z264	W6ZL07	Uncharacterized protein.	Uncharacterized protein.	0.958
W6Z264_COCMI	W6ZL22_COCMI	W6Z264	W6ZL22	Uncharacterized protein.	GLUE N-terminal domain-containing protein.	0.984
W6Z264_COCMI	W6ZYQ9_COCMI	W6Z264	W6ZYQ9	Uncharacterized protein.	Uncharacterized protein.	0.982
W6Z264_COCMI	W7A2U1_COCMI	W6Z264	W7A2U1	Uncharacterized protein.	Uncharacterized protein.	0.729