(34 nodes) Cytosolic small ribosomal subunit network (Bipolaris oryzae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6Z9A6_COCMI	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (122 aa)
	W6ZAN5_COCMI	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (207 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (255 aa)
	W6ZCI5_COCMI	Uncharacterized protein. (148 aa)
	W6ZDL3_COCMI	BZIP domain-containing protein. (281 aa)
	W6ZEK2_COCMI	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	W6ZG67_COCMI	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (720 aa)
	W6ZJW7_COCMI	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (87 aa)
	W6ZJV0_COCMI	Uncharacterized protein. (339 aa)
	W6ZHB6_COCMI	Uncharacterized protein. (68 aa)
	W6ZH20_COCMI	Uncharacterized protein. (58 aa)
	W6ZG78_COCMI	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (64 aa)
	W6ZYD8_COCMI	Ribosomal_S17_N domain-containing protein; Belongs to the universal ribosomal protein uS17 family. (159 aa)
	W6ZTN1_COCMI	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family. (260 aa)
	W6ZR49_COCMI	Uncharacterized protein. (56 aa)
	W6ZMH0_COCMI	Uncharacterized protein. (281 aa)
	COCMIDRAFT_418	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family. (153 aa)
	W6ZK49_COCMI	Uncharacterized protein. (321 aa)
	W6YQE1_COCMI	Uncharacterized protein. (404 aa)
	W6YTP4_COCMI	Uncharacterized protein. (146 aa)
	W6YTS2_COCMI	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (137 aa)
	W6YVR6_COCMI	40S ribosomal protein S27. (82 aa)
	W6YYP8_COCMI	Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner. (704 aa)
	W6Z031_COCMI	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (202 aa)
	W6Z329_COCMI	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	W6Z4F4_COCMI	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (239 aa)
	W6Z563_COCMI	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability. (86 aa)
	W6Z5W0_COCMI	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (142 aa)
	W6Z6R7_COCMI	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (96 aa)
	W6Z7C8_COCMI	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	W6Z871_COCMI	Ubiquitin-like domain-containing protein. (154 aa)
	W6Z8K6_COCMI	Uncharacterized protein. (240 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (299 aa)
	W6Z945_COCMI	S10_plectin domain-containing protein. (222 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCMIDRAFT_418	RPS0	W6ZLM6	W6Z8Z2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
COCMIDRAFT_418	RPS1	W6ZLM6	W6ZBA4	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
COCMIDRAFT_418	W6YQE1_COCMI	W6ZLM6	W6YQE1	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.977
COCMIDRAFT_418	W6YTP4_COCMI	W6ZLM6	W6YTP4	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
COCMIDRAFT_418	W6YTS2_COCMI	W6ZLM6	W6YTS2	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
COCMIDRAFT_418	W6YVR6_COCMI	W6ZLM6	W6YVR6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S27.	0.999
COCMIDRAFT_418	W6Z031_COCMI	W6ZLM6	W6Z031	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.	0.989
COCMIDRAFT_418	W6Z329_COCMI	W6ZLM6	W6Z329	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	S4 RNA-binding domain-containing protein; Belongs to the universal ribosomal protein uS4 family.	0.999
COCMIDRAFT_418	W6Z4F4_COCMI	W6ZLM6	W6Z4F4	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.	0.999
COCMIDRAFT_418	W6Z563_COCMI	W6ZLM6	W6Z563	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S21; Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Has a physiological role leading to 18S rRNA stability.	0.966
COCMIDRAFT_418	W6Z5W0_COCMI	W6ZLM6	W6Z5W0	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.999
COCMIDRAFT_418	W6Z6R7_COCMI	W6ZLM6	W6Z6R7	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.999
COCMIDRAFT_418	W6Z7C8_COCMI	W6ZLM6	W6Z7C8	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.	0.999
COCMIDRAFT_418	W6Z871_COCMI	W6ZLM6	W6Z871	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Ubiquitin-like domain-containing protein.	0.977
COCMIDRAFT_418	W6Z8K6_COCMI	W6ZLM6	W6Z8K6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.991
COCMIDRAFT_418	W6Z945_COCMI	W6ZLM6	W6Z945	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	S10_plectin domain-containing protein.	0.999
COCMIDRAFT_418	W6Z9A6_COCMI	W6ZLM6	W6Z9A6	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.	0.999
COCMIDRAFT_418	W6ZAN5_COCMI	W6ZLM6	W6ZAN5	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.999
COCMIDRAFT_418	W6ZCI5_COCMI	W6ZLM6	W6ZCI5	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	Uncharacterized protein.	0.999
COCMIDRAFT_418	W6ZDL3_COCMI	W6ZLM6	W6ZDL3	Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.	BZIP domain-containing protein.	0.977