26 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6YWE9_COCMI	GOLD domain-containing protein. (203 aa)
	W6YV16_COCMI	Fibronectin type-III domain-containing protein. (1160 aa)
	W6YYZ0_COCMI	Uncharacterized protein. (304 aa)
	W6Z2E1_COCMI	Uncharacterized protein; Belongs to the synaptobrevin family. (215 aa)
	W6Z2W7_COCMI	GFA domain-containing protein. (153 aa)
	W6Z422_COCMI	GOLD domain-containing protein. (219 aa)
	W6Z514_COCMI	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (775 aa)
	W6Z9U4_COCMI	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family. (189 aa)
	W6ZAC3_COCMI	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (672 aa)
	W6YVL8_COCMI	Uncharacterized protein. (452 aa)
	W6ZC80_COCMI	Uncharacterized protein. (1022 aa)
	W6YWM7_COCMI	Uncharacterized protein. (247 aa)
	W6YPG0_COCMI	Uncharacterized protein. (771 aa)
	W6YQ77_COCMI	PRA1 family protein. (176 aa)
	W7A4L1_COCMI	BHLH domain-containing protein. (1059 aa)
	W6ZWR2_COCMI	WD_REPEATS_REGION domain-containing protein. (1247 aa)
	VMA21	Vacuolar ATPase assembly integral membrane protein VMA21; Required for the assembly of the V0 complex of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum; Belongs to the VMA21 family. (107 aa)
	W6ZTR3_COCMI	Uncharacterized protein. (85 aa)
	W6ZP18_COCMI	Uncharacterized protein. (263 aa)
	W6ZMU4_COCMI	Uncharacterized protein. (884 aa)
	W6ZKE0_COCMI	L-type lectin-like domain-containing protein. (455 aa)
	W6ZJP4_COCMI	Uncharacterized protein. (805 aa)
	W6ZIN9_COCMI	Uncharacterized protein. (1024 aa)
	W6ZED9_COCMI	SSD domain-containing protein. (1150 aa)
	W6ZDI2_COCMI	Uncharacterized protein. (138 aa)
	W6ZDC9_COCMI	Uncharacterized protein. (987 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YPG0_COCMI	W6YWE9_COCMI	W6YPG0	W6YWE9	Uncharacterized protein.	GOLD domain-containing protein.	0.713
W6YPG0_COCMI	W6Z2E1_COCMI	W6YPG0	W6Z2E1	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.733
W6YPG0_COCMI	W6Z2W7_COCMI	W6YPG0	W6Z2W7	Uncharacterized protein.	GFA domain-containing protein.	0.828
W6YPG0_COCMI	W6Z422_COCMI	W6YPG0	W6Z422	Uncharacterized protein.	GOLD domain-containing protein.	0.684
W6YPG0_COCMI	W6Z514_COCMI	W6YPG0	W6Z514	Uncharacterized protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.953
W6YPG0_COCMI	W6ZDC9_COCMI	W6YPG0	W6ZDC9	Uncharacterized protein.	Uncharacterized protein.	0.518
W6YPG0_COCMI	W6ZDI2_COCMI	W6YPG0	W6ZDI2	Uncharacterized protein.	Uncharacterized protein.	0.639
W6YPG0_COCMI	W6ZIN9_COCMI	W6YPG0	W6ZIN9	Uncharacterized protein.	Uncharacterized protein.	0.758
W6YPG0_COCMI	W6ZJP4_COCMI	W6YPG0	W6ZJP4	Uncharacterized protein.	Uncharacterized protein.	0.518
W6YPG0_COCMI	W6ZKE0_COCMI	W6YPG0	W6ZKE0	Uncharacterized protein.	L-type lectin-like domain-containing protein.	0.678
W6YPG0_COCMI	W6ZMU4_COCMI	W6YPG0	W6ZMU4	Uncharacterized protein.	Uncharacterized protein.	0.911
W6YPG0_COCMI	W6ZP18_COCMI	W6YPG0	W6ZP18	Uncharacterized protein.	Uncharacterized protein.	0.861
W6YPG0_COCMI	W6ZWR2_COCMI	W6YPG0	W6ZWR2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.940
W6YWE9_COCMI	W6YPG0_COCMI	W6YWE9	W6YPG0	GOLD domain-containing protein.	Uncharacterized protein.	0.713
W6YWE9_COCMI	W6YYZ0_COCMI	W6YWE9	W6YYZ0	GOLD domain-containing protein.	Uncharacterized protein.	0.872
W6YWE9_COCMI	W6Z2E1_COCMI	W6YWE9	W6Z2E1	GOLD domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.841
W6YWE9_COCMI	W6Z2W7_COCMI	W6YWE9	W6Z2W7	GOLD domain-containing protein.	GFA domain-containing protein.	0.651
W6YWE9_COCMI	W6Z422_COCMI	W6YWE9	W6Z422	GOLD domain-containing protein.	GOLD domain-containing protein.	0.999
W6YWE9_COCMI	W6Z514_COCMI	W6YWE9	W6Z514	GOLD domain-containing protein.	Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.	0.840
W6YWE9_COCMI	W6Z9U4_COCMI	W6YWE9	W6Z9U4	GOLD domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.	0.713