27 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6Z5N6_COCMI	Sm domain-containing protein. (82 aa)
	W6ZKV5_COCMI	Uncharacterized protein; Belongs to the cytochrome P450 family. (511 aa)
	W6ZHQ1_COCMI	CPSF_A domain-containing protein. (1235 aa)
	W6ZBC3_COCMI	RRM domain-containing protein. (204 aa)
	W6ZGI6_COCMI	Uncharacterized protein. (331 aa)
	W6ZGX9_COCMI	Uncharacterized protein; Belongs to the cytochrome P450 family. (518 aa)
	W6Z2P4_COCMI	Matrin-type domain-containing protein. (235 aa)
	W6Z371_COCMI	Sm domain-containing protein. (136 aa)
	W6Z3A4_COCMI	Matrin-type domain-containing protein. (498 aa)
	W7A2F0_COCMI	Uncharacterized protein. (776 aa)
	W6ZXM6_COCMI	Uncharacterized protein. (723 aa)
	W6Z8M6_COCMI	PSP domain-containing protein. (569 aa)
	W6ZAM4_COCMI	Uncharacterized protein; Belongs to the cytochrome P450 family. (509 aa)
	W6ZAT9_COCMI	Uncharacterized protein. (520 aa)
	W6Z821_COCMI	Uncharacterized protein; Belongs to the cytochrome P450 family. (480 aa)
	W6ZNP9_COCMI	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (575 aa)
	W6Z9B2_COCMI	Uncharacterized protein; Belongs to the cytochrome P450 family. (524 aa)
	W6ZNX3_COCMI	Matrin-type domain-containing protein. (57 aa)
	W6ZT49_COCMI	Uncharacterized protein. (244 aa)
	COCMIDRAFT_523	SF3b1 domain-containing protein. (1187 aa)
	W6YZG1_COCMI	RRM domain-containing protein. (178 aa)
	W6YZR2_COCMI	Suf domain-containing protein. (564 aa)
	W6YQV8_COCMI	Uncharacterized protein; Belongs to the cytochrome P450 family. (525 aa)
	W6YY62_COCMI	Uncharacterized protein. (292 aa)
	W6YYM3_COCMI	Small nuclear ribonucleoprotein G. (84 aa)
	W6Z9X8_COCMI	Uncharacterized protein. (582 aa)
	W6ZLG0_COCMI	Uncharacterized protein. (244 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCMIDRAFT_523	W6YY62_COCMI	W6ZLX9	W6YY62	SF3b1 domain-containing protein.	Uncharacterized protein.	0.869
COCMIDRAFT_523	W6YYM3_COCMI	W6ZLX9	W6YYM3	SF3b1 domain-containing protein.	Small nuclear ribonucleoprotein G.	0.983
COCMIDRAFT_523	W6YZG1_COCMI	W6ZLX9	W6YZG1	SF3b1 domain-containing protein.	RRM domain-containing protein.	0.937
COCMIDRAFT_523	W6YZR2_COCMI	W6ZLX9	W6YZR2	SF3b1 domain-containing protein.	Suf domain-containing protein.	0.854
COCMIDRAFT_523	W6Z2P4_COCMI	W6ZLX9	W6Z2P4	SF3b1 domain-containing protein.	Matrin-type domain-containing protein.	0.997
COCMIDRAFT_523	W6Z371_COCMI	W6ZLX9	W6Z371	SF3b1 domain-containing protein.	Sm domain-containing protein.	0.855
COCMIDRAFT_523	W6Z3A4_COCMI	W6ZLX9	W6Z3A4	SF3b1 domain-containing protein.	Matrin-type domain-containing protein.	0.994
COCMIDRAFT_523	W6Z5N6_COCMI	W6ZLX9	W6Z5N6	SF3b1 domain-containing protein.	Sm domain-containing protein.	0.946
COCMIDRAFT_523	W6Z8M6_COCMI	W6ZLX9	W6Z8M6	SF3b1 domain-containing protein.	PSP domain-containing protein.	0.999
COCMIDRAFT_523	W6Z9X8_COCMI	W6ZLX9	W6Z9X8	SF3b1 domain-containing protein.	Uncharacterized protein.	0.990
COCMIDRAFT_523	W6ZAT9_COCMI	W6ZLX9	W6ZAT9	SF3b1 domain-containing protein.	Uncharacterized protein.	0.994
COCMIDRAFT_523	W6ZBC3_COCMI	W6ZLX9	W6ZBC3	SF3b1 domain-containing protein.	RRM domain-containing protein.	0.943
COCMIDRAFT_523	W6ZGI6_COCMI	W6ZLX9	W6ZGI6	SF3b1 domain-containing protein.	Uncharacterized protein.	0.999
COCMIDRAFT_523	W6ZHQ1_COCMI	W6ZLX9	W6ZHQ1	SF3b1 domain-containing protein.	CPSF_A domain-containing protein.	0.999
COCMIDRAFT_523	W6ZLG0_COCMI	W6ZLX9	W6ZLG0	SF3b1 domain-containing protein.	Uncharacterized protein.	0.937
COCMIDRAFT_523	W6ZNP9_COCMI	W6ZLX9	W6ZNP9	SF3b1 domain-containing protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.996
COCMIDRAFT_523	W6ZNX3_COCMI	W6ZLX9	W6ZNX3	SF3b1 domain-containing protein.	Matrin-type domain-containing protein.	0.987
COCMIDRAFT_523	W6ZT49_COCMI	W6ZLX9	W6ZT49	SF3b1 domain-containing protein.	Uncharacterized protein.	0.998
COCMIDRAFT_523	W6ZXM6_COCMI	W6ZLX9	W6ZXM6	SF3b1 domain-containing protein.	Uncharacterized protein.	0.826
COCMIDRAFT_523	W7A2F0_COCMI	W6ZLX9	W7A2F0	SF3b1 domain-containing protein.	Uncharacterized protein.	0.539