9 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6ZGR8_COCMI	Uncharacterized protein. (745 aa)
	W6ZF96_COCMI	Rad21_Rec8_N domain-containing protein. (720 aa)
	W6YQY1_COCMI	Uncharacterized protein. (572 aa)
	W6YRN1_COCMI	Uncharacterized protein. (348 aa)
	W6YUR2_COCMI	Velvet domain-containing protein. (597 aa)
	COCMIDRAFT_275	Uncharacterized protein. (160 aa)
	COCMIDRAFT_273	Uncharacterized protein. (319 aa)
	W6ZKN5_COCMI	Sister chromatid cohesion protein. (1843 aa)
	W6ZB99_COCMI	WAPL domain-containing protein. (1110 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COCMIDRAFT_273	W6ZKN5_COCMI	W6ZM42	W6ZKN5	Uncharacterized protein.	Sister chromatid cohesion protein.	0.444
COCMIDRAFT_275	W6ZKN5_COCMI	W6ZLV3	W6ZKN5	Uncharacterized protein.	Sister chromatid cohesion protein.	0.444
W6YQY1_COCMI	W6ZF96_COCMI	W6YQY1	W6ZF96	Uncharacterized protein.	Rad21_Rec8_N domain-containing protein.	0.793
W6YRN1_COCMI	W6ZKN5_COCMI	W6YRN1	W6ZKN5	Uncharacterized protein.	Sister chromatid cohesion protein.	0.444
W6YUR2_COCMI	W6ZF96_COCMI	W6YUR2	W6ZF96	Velvet domain-containing protein.	Rad21_Rec8_N domain-containing protein.	0.793
W6ZB99_COCMI	W6ZKN5_COCMI	W6ZB99	W6ZKN5	WAPL domain-containing protein.	Sister chromatid cohesion protein.	0.473
W6ZF96_COCMI	W6YQY1_COCMI	W6ZF96	W6YQY1	Rad21_Rec8_N domain-containing protein.	Uncharacterized protein.	0.793
W6ZF96_COCMI	W6YUR2_COCMI	W6ZF96	W6YUR2	Rad21_Rec8_N domain-containing protein.	Velvet domain-containing protein.	0.793
W6ZF96_COCMI	W6ZKN5_COCMI	W6ZF96	W6ZKN5	Rad21_Rec8_N domain-containing protein.	Sister chromatid cohesion protein.	0.793
W6ZGR8_COCMI	W6ZKN5_COCMI	W6ZGR8	W6ZKN5	Uncharacterized protein.	Sister chromatid cohesion protein.	0.763
W6ZKN5_COCMI	COCMIDRAFT_273	W6ZKN5	W6ZM42	Sister chromatid cohesion protein.	Uncharacterized protein.	0.444
W6ZKN5_COCMI	COCMIDRAFT_275	W6ZKN5	W6ZLV3	Sister chromatid cohesion protein.	Uncharacterized protein.	0.444
W6ZKN5_COCMI	W6YRN1_COCMI	W6ZKN5	W6YRN1	Sister chromatid cohesion protein.	Uncharacterized protein.	0.444
W6ZKN5_COCMI	W6ZB99_COCMI	W6ZKN5	W6ZB99	Sister chromatid cohesion protein.	WAPL domain-containing protein.	0.473
W6ZKN5_COCMI	W6ZF96_COCMI	W6ZKN5	W6ZF96	Sister chromatid cohesion protein.	Rad21_Rec8_N domain-containing protein.	0.793
W6ZKN5_COCMI	W6ZGR8_COCMI	W6ZKN5	W6ZGR8	Sister chromatid cohesion protein.	Uncharacterized protein.	0.763