20 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6ZE61_COCMI	Uncharacterized protein. (381 aa)
	W6YQE1_COCMI	Uncharacterized protein. (404 aa)
	W6YTP6_COCMI	Uncharacterized protein. (379 aa)
	W6YYE9_COCMI	RING-type domain-containing protein. (111 aa)
	W6YZ17_COCMI	Ubiquitin-like domain-containing protein. (337 aa)
	W6Z083_COCMI	C2H2-type domain-containing protein. (718 aa)
	W6Z0B5_COCMI	Uncharacterized protein. (407 aa)
	W6Z301_COCMI	ERCC4 domain-containing protein. (1080 aa)
	W6Z3F9_COCMI	XPGI domain-containing protein. (791 aa)
	W6Z871_COCMI	Ubiquitin-like domain-containing protein. (154 aa)
	W6Z9I2_COCMI	Poly [ADP-ribose] polymerase. (656 aa)
	W6ZDL3_COCMI	BZIP domain-containing protein. (281 aa)
	W6ZEZ7_COCMI	Uncharacterized protein. (931 aa)
	W6ZHS8_COCMI	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (611 aa)
	W6ZIB6_COCMI	Uncharacterized protein. (243 aa)
	W6ZLG7_COCMI	CPSF_A domain-containing protein. (1116 aa)
	W6ZMI3_COCMI	BRCT domain-containing protein. (452 aa)
	W7A0H2_COCMI	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes. (522 aa)
	W7A1S7_COCMI	CULLIN_2 domain-containing protein; Belongs to the cullin family. (879 aa)
	W6YM41_COCMI	Uncharacterized protein. (175 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6YM41_COCMI	W6YQE1_COCMI	W6YM41	W6YQE1	Uncharacterized protein.	Uncharacterized protein.	0.883
W6YM41_COCMI	W6YTP6_COCMI	W6YM41	W6YTP6	Uncharacterized protein.	Uncharacterized protein.	0.991
W6YM41_COCMI	W6YYE9_COCMI	W6YM41	W6YYE9	Uncharacterized protein.	RING-type domain-containing protein.	0.953
W6YM41_COCMI	W6YZ17_COCMI	W6YM41	W6YZ17	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.834
W6YM41_COCMI	W6Z083_COCMI	W6YM41	W6Z083	Uncharacterized protein.	C2H2-type domain-containing protein.	0.711
W6YM41_COCMI	W6Z0B5_COCMI	W6YM41	W6Z0B5	Uncharacterized protein.	Uncharacterized protein.	0.584
W6YM41_COCMI	W6Z301_COCMI	W6YM41	W6Z301	Uncharacterized protein.	ERCC4 domain-containing protein.	0.642
W6YM41_COCMI	W6Z3F9_COCMI	W6YM41	W6Z3F9	Uncharacterized protein.	XPGI domain-containing protein.	0.438
W6YM41_COCMI	W6Z871_COCMI	W6YM41	W6Z871	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.886
W6YM41_COCMI	W6Z9I2_COCMI	W6YM41	W6Z9I2	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.657
W6YM41_COCMI	W6ZDL3_COCMI	W6YM41	W6ZDL3	Uncharacterized protein.	BZIP domain-containing protein.	0.883
W6YM41_COCMI	W6ZE61_COCMI	W6YM41	W6ZE61	Uncharacterized protein.	Uncharacterized protein.	0.664
W6YM41_COCMI	W6ZEZ7_COCMI	W6YM41	W6ZEZ7	Uncharacterized protein.	Uncharacterized protein.	0.559
W6YM41_COCMI	W6ZHS8_COCMI	W6YM41	W6ZHS8	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.583
W6YM41_COCMI	W6ZIB6_COCMI	W6YM41	W6ZIB6	Uncharacterized protein.	Uncharacterized protein.	0.619
W6YM41_COCMI	W6ZLG7_COCMI	W6YM41	W6ZLG7	Uncharacterized protein.	CPSF_A domain-containing protein.	0.764
W6YM41_COCMI	W6ZMI3_COCMI	W6YM41	W6ZMI3	Uncharacterized protein.	BRCT domain-containing protein.	0.559
W6YM41_COCMI	W7A0H2_COCMI	W6YM41	W7A0H2	Uncharacterized protein.	DNA damage-binding protein CMR1; DNA-binding protein that binds to both single- and double- stranded DNA. Binds preferentially to UV-damaged DNA. May be involved in DNA-metabolic processes.	0.621
W6YM41_COCMI	W7A1S7_COCMI	W6YM41	W7A1S7	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.748
W6YQE1_COCMI	W6YM41_COCMI	W6YQE1	W6YM41	Uncharacterized protein.	Uncharacterized protein.	0.883