19 items (Bipolaris oryzae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W6ZL52_COCMI	Uncharacterized protein. (294 aa)
	W6ZX92_COCMI	AB hydrolase-1 domain-containing protein. (298 aa)
	W7A0I4_COCMI	NmrA domain-containing protein. (622 aa)
	W7A0N3_COCMI	Uncharacterized protein. (261 aa)
	W6YJY2_COCMI	NmrA domain-containing protein. (326 aa)
	W6YX73_COCMI	AB hydrolase-1 domain-containing protein. (358 aa)
	W6YXV1_COCMI	Uncharacterized protein. (364 aa)
	W6YYU2_COCMI	AB hydrolase-1 domain-containing protein. (388 aa)
	W6Z2K1_COCMI	AB hydrolase-1 domain-containing protein. (300 aa)
	W6Z2Q8_COCMI	Uncharacterized protein. (318 aa)
	W6Z560_COCMI	AB hydrolase-1 domain-containing protein. (343 aa)
	W6Z651_COCMI	AB hydrolase-1 domain-containing protein. (335 aa)
	W6Z7N5_COCMI	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (282 aa)
	W6ZA04_COCMI	AB hydrolase-1 domain-containing protein. (300 aa)
	W6ZDN8_COCMI	AB hydrolase-1 domain-containing protein. (331 aa)
	W6ZFT0_COCMI	AB hydrolase-1 domain-containing protein. (486 aa)
	W6ZGD2_COCMI	AB hydrolase-1 domain-containing protein. (307 aa)
	W6ZL35_COCMI	Leukotriene A(4) hydrolase. (631 aa)
	W6ZLR6_COCMI	Uncharacterized protein. (285 aa)

Your Current Organism:

Bipolaris oryzae

NCBI taxonomy Id: 930090
Other names: B. oryzae ATCC 44560, Bipolaris oryzae ATCC 44560, Cochliobolus miyabeanus ATCC 44560, Cochliobolus miyabeanus WK-1C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
W6Z560_COCMI	W6Z651_COCMI	W6Z560	W6Z651	AB hydrolase-1 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.911
W6Z560_COCMI	W6ZDN8_COCMI	W6Z560	W6ZDN8	AB hydrolase-1 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.926
W6Z651_COCMI	W6Z560_COCMI	W6Z651	W6Z560	AB hydrolase-1 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.911
W6Z651_COCMI	W6ZDN8_COCMI	W6Z651	W6ZDN8	AB hydrolase-1 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.911
W6ZDN8_COCMI	W6Z560_COCMI	W6ZDN8	W6Z560	AB hydrolase-1 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.926
W6ZDN8_COCMI	W6Z651_COCMI	W6ZDN8	W6Z651	AB hydrolase-1 domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.911